Modeling protein evolution with several amino acid replacement matrices depending on site rates. (Q43456098)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22491036%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

title

Modeling protein evolution with several amino acid replacement matrices depending on site rates (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22491036%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

0 references

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22491036%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

author name string

Cuong Cao Dang

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22491036%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

Olivier Gascuel

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22491036%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

publication date

6 April 2012

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22491036%20AND%20SRC:MED&resulttype=core&format=json

Molecular Biology and Evolution

28 January 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22491036%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

volume

29

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22491036%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

issue

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22491036%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

page(s)

2921-2936

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22491036%20AND%20SRC:MED&resulttype=core&format=json

A new look at the statistical model identification

28 January 2020

cites work

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS112

21 January 2018

The Protein Data Bank

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS112

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS112

Evolutionary trees from DNA sequences: A maximum likelihood approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS112

A Hidden Markov Model approach to variation among sites in rate of evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS112

BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS112

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS112

A justification for reporting the majority-rule consensus tree in Bayesian phylogenetics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS112

An expectation maximization algorithm for training hidden substitution models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS112

The rapid generation of mutation data matrices from protein sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS112

A mutation data matrix for transmembrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS112

Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS112

Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS112

XRate: a fast prototyping, training and annotation tool for phylo-grammars

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS112

Context-dependent optimal substitution matrices

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS112

A simple method for displaying the hydropathic character of a protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS112

A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS112

An improved general amino acid replacement matrix

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS112

Empirical profile mixture models for phylogenetic reconstruction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS112

Phylogenetic mixture models for proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS112

PASSML: combining evolutionary inference and protein secondary structure prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS112

The Membrane Protein Data Bank

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS112

Estimation of rates-across-sites distributions in phylogenetic substitution models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS112

Combining protein evolution and secondary structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS112

A class frequency mixture model that adjusts for site-specific amino acid frequencies and improves inference of protein phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS112

A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS112

Models of amino acid substitution and applications to mitochondrial protein evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS112

21 January 2018

Identifiers

DOI

10.1093/MOLBEV/MSS112

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/woxyztvx4bbgvdcoln4rgynoke

mapped directly with Wikidata item

30 July 2022

based on heuristic

Fatcat ID

release_woxyztvx4bbgvdcoln4rgynoke

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/woxyztvx4bbgvdcoln4rgynoke

mapped directly with Wikidata item

30 July 2022

based on heuristic

1 reference

https://api.fatcat.wiki/v0/release/woxyztvx4bbgvdcoln4rgynoke