Coupling transcription factor occupancy to nucleosome architecture with DNase-FLASH. (Q43560554)

24 November 2017

title

Coupling transcription factor occupancy to nucleosome architecture with DNase-FLASH. (English)

1 reference

24 November 2017

4

1 reference

24 November 2017

John Stamatoyannopoulos

series ordinal

5

object named as

John A Stamatoyannopoulos

1 reference

24 November 2017

Jeff Vierstra

1

1 reference

24 November 2017

Hao Wang

series ordinal

2

1 reference

24 November 2017

Sam John

series ordinal

3

1 reference

24 November 2017

publication date

3 November 2013

1 reference

24 November 2017

1 reference

24 November 2017

volume

11

1 reference

24 November 2017

issue

1

1 reference

24 November 2017

page(s)

66-72

1 reference

Transcriptional regulation by the immediate early protein of pseudorabies virus during in vitro nucleosome assembly

24 November 2017

cites work

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2713

Global mapping of protein-DNA interactions in vivo by digital genomic footprinting

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2713

An expansive human regulatory lexicon encoded in transcription factor footprints

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2713

Controls of nucleosome positioning in the human genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2713

Determinants of nucleosome organization in primary human cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2713

Cleavage of DNA in nuclei and chromatin with staphylococcal nuclease

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2713

Kinetic analysis of deoxyribonuclease I cleavages in the nucleosome core: Evidence for a DNA superhelix

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2713

Internal structure of the chromatin subunit

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2713

Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2713

H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2713

The accessible chromatin landscape of the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2713

The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2713

Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2713

Statistical distributions of nucleosomes: nonrandom locations by a stochastic mechanism

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2713

Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2713

Genome-wide structure and organization of eukaryotic pre-initiation complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2713

Genome-wide characterization of transcriptional start sites in humans by integrative transcriptome analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2713

Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2713

Dynamic regulation of nucleosome positioning in the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2713

A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2713

High-resolution profiling of histone methylations in the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2713

Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2713

Epigenome characterization at single base-pair resolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2713

Fast and accurate short read alignment with Burrows-Wheeler transform

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2713

Chromatin accessibility pre-determines glucocorticoid receptor binding patterns.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2713

TRANSFAC: a database on transcription factors and their DNA binding sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2713

FIMO: scanning for occurrences of a given motif

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2713

GENCODE: the reference human genome annotation for The ENCODE Project

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2713

Nuclease hypersensitive sites in chromatin

21 January 2018

1 reference

12 December 2020

DNase I footprinting of the nucleosome in whole nuclei

1 reference

12 December 2020

NF-E2 and GATA binding motifs are required for the formation of DNase I hypersensitive site 4 of the human beta-globin locus control region.

1 reference

12 December 2020

Methylation of histone H3 Lys 4 in coding regions of active genes

1 reference

12 December 2020

Identifiers

DOI

10.1038/NMETH.2713

1 reference

Dimensions Publication ID

24 November 2017

1022350298

0 references

Fatcat ID

release_yh4sl56f5fbbzm67cllbxmtcbq

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/yh4sl56f5fbbzm67cllbxmtcbq

24 November 2022

mapped directly with Wikidata item

1 reference