Comparing clustering and pre-processing in taxonomy analysis (Q43750075)

26 November 2017

Comparing clustering and pre-processing in taxonomy analysis (English)

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26 November 2017

2

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26 November 2017

Marc J Bonder

1

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author name string

Egija Zaura

series ordinal

3

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PubMed ID

22962346

26 November 2017

Bernd W Brandt

series ordinal

4

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PubMed ID

22962346

26 November 2017

language of work or name

English

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publication date

8 September 2012

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26 November 2017

7

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based on heuristic

inferred from page(s)

published in

Bioinformatics

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26 November 2017

28

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26 November 2017

22

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26 November 2017

2891-2897

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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1 reference

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TaxMan: a server to trim rRNA reference databases and inspect taxonomic coverage

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1 reference

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ESPRIT-Tree: hierarchical clustering analysis of millions of 16S rRNA pyrosequences in quasilinear computational time

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1 reference

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QIIME allows analysis of high-throughput community sequencing data

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1 reference

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The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis

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The human oral microbiome

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Search and clustering orders of magnitude faster than BLAST

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UCHIME improves sensitivity and speed of chimera detection

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Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

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Ironing out the wrinkles in the rare biosphere through improved OTU clustering

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Two-stage clustering (TSC): a pipeline for selecting operational taxonomic units for the high-throughput sequencing of PCR amplicons

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1 reference

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Pyrosequencing analysis of the oral microflora of healthy adults

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The relation between oral Candida load and bacterial microbiome profiles in Dutch older adults

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Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

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Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

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Ecology of the microbiome of the infected root canal system: a comparison between apical and coronal root segments

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Bacterial diversity in human subgingival plaque

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SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

21 January 2018

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Removing noise from pyrosequenced amplicons

21 January 2018

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Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions

21 January 2018

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Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies

21 January 2018

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Assessing and improving methods used in operational taxonomic unit-based approaches for 16S rRNA gene sequence analysis

21 January 2018

1 reference

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Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

21 January 2018

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Next-generation sequencing transforms today's biology

21 January 2018

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A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis

21 January 2018

1 reference

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Secondary structure information does not improve OTU assignment for partial 16s rRNA sequences

21 January 2018

1 reference

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Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys

21 January 2018

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Saliva microbiomes distinguish caries-active from healthy human populations

21 January 2018

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10.1093/BIOINFORMATICS/BTS552

21 January 2018

Identifiers

DOI

1 reference

journals/bioinformatics/BonderAZB12

26 November 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PubMed ID

22962346