Computer modeling of three-dimensional structure of DNA-packaging RNA (pRNA) monomer, dimer, and hexamer of Phi29 DNA packaging motor (Q43911280)

28 November 2017

title

Computer modeling of three-dimensional structure of DNA-packaging RNA (pRNA) monomer, dimer, and hexamer of Phi29 DNA packaging motor (English)

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28 November 2017

Stephen Hoeprich

1

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28 November 2017

Peixuan Guo

series ordinal

2

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28 November 2017

language of work or name

English

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publication date

8 March 2002

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Journal of Biological Chemistry

28 November 2017

published in

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28 November 2017

volume

277

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28 November 2017

issue

23

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28 November 2017

page(s)

20794-20803

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The DNA translocating vertex of dsDNA bacteriophage

28 November 2017

cites work

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

A small viral RNA is required for in vitro packaging of bacteriophage phi 29 DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

Characterization of the small RNA of the bacteriophage phi 29 DNA packaging machine

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

Dimerization of the 3'UTR of bicoid mRNA involves a two-step mechanism

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

Probing the structure of monomers and dimers of the bacterial virus phi29 hexamer RNA complex by chemical modification.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

Structure of the bacteriophage phi29 DNA packaging motor

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

A dimer as a building block in assembling RNA. A hexamer that gears bacterial virus phi29 DNA-translocating machinery

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

Inter-RNA interaction of phage phi29 pRNA to form a hexameric complex for viral DNA transportation

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

Bacteriophage DNA packaging: RNA gears in a DNA transport machine

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

Identification of the primary site of the human immunodeficiency virus type 1 RNA dimerization in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

Sequences involved in the dimerisation of human T cell leukaemia virus type-1 RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

Sequence requirement for hand-in-hand interaction in formation of RNA dimers and hexamers to gear phi29 DNA translocation motor

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

RNA-RNA interaction is required for the formation of specific bicoid mRNA 3' UTR-STAUFEN ribonucleoprotein particles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

Chemical modification patterns of active and inactive as well as procapsid-bound and unbound DNA-packaging RNAof bacterial virus Phi29.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

The bacteriophage straight phi29 portal motor can package DNA against a large internal force

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

Biophysical Society meeting. Crossover research yields scents and sensitivity

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

Cryoelectron-microscopy image reconstruction of symmetry mismatches in bacteriophage phi29

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

RNA dependence of the bacteriophage φ29 DNA packaging ATPase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

Three-dimensional interaction of Phi29 pRNA dimer probed by chemical modification interference, cryo-AFM, and cross-linking

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

Photoinduced cross-linking of RNA by cis-Rh(phen)2Cl2+ and cis-Rh(phen)(phi)Cl2+: a new family of light activatable nucleic acid cross-linking agents

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

Mapping the inter-RNA interaction of bacterial virus phi29 packaging RNA by site-specific photoaffinity cross-linking

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

Circularly permuted tRNAs as specific photoaffinity probes of ribonuclease P RNA structure.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

Probing the structure of RNAs in solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

Contacts between Escherichia coli RNA polymerase and an early promoter of phage T7.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

On loop folding in nucleic acid hairpin-type structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

Phylogenetic and genetic evidence for base-triples in the catalytic domain of group I introns

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

On finding all suboptimal foldings of an RNA molecule

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

A new interaction between the mouse 5' external transcribed spacer of pre-rRNA and U3 snRNA detected by psoralen crosslinking

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

Psoralens as photoactive probes of nucleic acid structure and function: organic chemistry, photochemistry, and biochemistry

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

Mapping the location of psoralen crosslinks on RNA by mung bean nuclease sensitivity of RNA.DNA hybrids

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

Folding of Circularly Permuted Transfer RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

Circularly permuted viral pRNA active and specific in the packaging of bacteriophage phi 29 DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

Bacteriophage B103: complete DNA sequence of its genome and relationship to other Bacillus phages

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

Inhibition of Phage φ29 Assembly by Antisense Oligonucleotides Targeting Viral pRNA Essential for DNA Packaging

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

21 January 2018

RNA structure prediction

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

Three-dimensional reconstruction of the connector of bacteriophage phi 29 at 1.8 nm resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

Function of hexameric RNA in packaging of bacteriophage phi 29 DNA in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

Kissing-loop model of HIV-1 genome dimerization: HIV-1 RNAs can assume alternative dimeric forms, and all sequences upstream or downstream of hairpin 248-271 are dispensable for dimer formation

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

NCp7 activates HIV-1Lai RNA dimerization by converting a transient loop-loop complex into a stable dimer

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

The proximate 5' and 3' ends of the 120-base viral RNA (pRNA) are crucial for the packaging of bacteriophage phi 29 DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

Psoralen crosslinking of small RNAs in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

Rapid chemical probing of conformation in 16 S ribosomal RNA and 30 S ribosomal subunits using primer extension

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

A chemical modification/interference study of yeast pre-mRNA spliceosome assembly and splicing

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

MANIP: an interactive tool for modelling RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

Crystallographic refinement of yeast aspartic acid transfer RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

Structure determination of the head-tail connector of bacteriophage phi29

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112061200

21 January 2018

Identifiers

DOI

10.1074/JBC.M112061200

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28 November 2017

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