pH-dependent conformational flexibility of the SARS-CoV main proteinase (M(pro)) dimer: molecular dynamics simulations and multiple X-ray structure analyses (Q43919382)

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scientific article published on 23 September 2005

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English	pH-dependent conformational flexibility of the SARS-CoV main proteinase (M(pro)) dimer: molecular dynamics simulations and multiple X-ray structure analyses	scientific article published on 23 September 2005

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scholarly article

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Europe PubMed Central

PubMed publication ID

28 November 2017

pH-dependent conformational flexibility of the SARS-CoV main proteinase (M(pro)) dimer: molecular dynamics simulations and multiple X-ray structure analyses (English)

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Europe PubMed Central

PubMed publication ID

28 November 2017

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inferred from abstract

structural biology

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based on heuristic

inferred from abstract

3C-like proteinase [SARS-Cov]

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5

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28 November 2017

Rolf Hilgenfeld

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object named as

Rolf Hilgenfeld

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28 November 2017

12

object named as

Xu Shen

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28 November 2017

7

object named as

Zihe Rao

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28 November 2017

author name string

Jinzhi Tan

1

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28 November 2017

Koen H G Verschueren

2

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28 November 2017

Kanchan Anand

3

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28 November 2017

Jianhua Shen

4

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28 November 2017

Yechun Xu

6

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28 November 2017

Janna Bigalke

8

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28 November 2017

Burkhard Heisen

9

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28 November 2017

Jeroen R Mesters

10

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28 November 2017

Kaixian Chen

11

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28 November 2017

Hualiang Jiang

13

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28 November 2017

language of work or name

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publication date

23 September 2005

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28 November 2017

number of pages

16

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Journal of Molecular Biology

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28 November 2017

354

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1

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28 November 2017

25-40

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28 November 2017

Clinical progression and viral load in a community outbreak of coronavirus-associated SARS pneumonia: a prospective study

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094468

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Identification of a novel coronavirus in patients with severe acute respiratory syndrome

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094468

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A novel coronavirus associated with severe acute respiratory syndrome

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094468

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Molecular mechanisms of severe acute respiratory syndrome (SARS)

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094468

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Mechanisms and enzymes involved in SARS coronavirus genome expression

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094468

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Structure-based design, synthesis, and biological evaluation of irreversible human rhinovirus 3C protease inhibitors. 6. Structure-activity studies of orally bioavailable, 2-pyridone-containing peptidomimetics.

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094468

12 September 2020

Structure of human rhinovirus 3C protease reveals a trypsin-like polypeptide fold, RNA-binding site, and means for cleaving precursor polyprotein

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094468

12 September 2020

Coronavirus main proteinase (3CLpro) structure: basis for design of anti-SARS drugs

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094468

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A 3D model of SARS_CoV 3CL proteinase and its inhibitors design by virtual screening.

1 reference

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1 reference

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Structure of coronavirus main proteinase reveals combination of a chymotrypsin fold with an extra alpha-helical domain

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094468

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The crystal structures of severe acute respiratory syndrome virus main protease and its complex with an inhibitor

1 reference

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12 September 2020

Mechanism of the maturation process of SARS-CoV 3CL protease

1 reference

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Biosynthesis, purification, and characterization of the human coronavirus 229E 3C-like proteinase.

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094468

12 September 2020

Dissection study on the severe acute respiratory syndrome 3C-like protease reveals the critical role of the extra domain in dimerization of the enzyme: defining the extra domain as a new target for design of highly specific protease inhibitors

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094468

12 September 2020

Severe acute respiratory syndrome coronavirus 3C-like proteinase N terminus is indispensable for proteolytic activity but not for enzyme dimerization. Biochemical and thermodynamic investigation in conjunction with molecular dynamics simulations

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094468

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Biosynthesis, Purification, and Substrate Specificity of Severe Acute Respiratory Syndrome Coronavirus 3C-like Proteinase

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Mercaptide-imidazolium ion-pair: the reactive nucleophile in papain catalysis

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Characterization of the active site thiol group of rhinovirus 2A proteinase.

1 reference

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3C-like proteinase from SARS coronavirus catalyzes substrate hydrolysis by a general base mechanism

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094468

12 September 2020

Three-dimensional model of a substrate-bound SARS chymotrypsin-like cysteine proteinase predicted by multiple molecular dynamics simulations: catalytic efficiency regulated by substrate binding

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094468

12 September 2020

Stabilization of ion selectivity filter by pore loop ion pairs in an inwardly rectifying potassium channel

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094468

12 September 2020

Processing of X-ray diffraction data collected in oscillation mode

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094468

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Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094468

12 September 2020

Refinement of macromolecular structures by the maximum-likelihood method

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094468

12 September 2020

Improved methods for building protein models in electron density maps and the location of errors in these models

1 reference

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12 September 2020

XtalView/Xfit--A versatile program for manipulating atomic coordinates and electron density

1 reference

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12 September 2020

SURFNET: a program for visualizing molecular surfaces, cavities, and intermolecular interactions

1 reference

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12 September 2020

Quaternary structure of the severe acute respiratory syndrome (SARS) coronavirus main protease

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094468

12 September 2020

Identifiers

10.1016/J.JMB.2005.09.012

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Europe PubMed Central

PubMed publication ID

28 November 2017

PMC publication ID

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PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

28 November 2017

ResearchGate publication ID

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