Relative character-state space, amount of potential phylogenetic information, and heterogeneity of nucleotide and amino acid characters (Q44026398)

29 November 2017

Relative character-state space, amount of potential phylogenetic information, and heterogeneity of nucleotide and amino acid characters (English)

1 reference

29 November 2017

1 reference

Mark P Simmons

1

1 reference

PubMed ID

15288066

29 November 2017

Timothy G Carr

series ordinal

2

1 reference

PubMed ID

15288066

29 November 2017

Kevin O'Neill

series ordinal

3

1 reference

29 November 2017

1 September 2004

1 reference

Molecular Phylogenetics and Evolution

29 November 2017

14

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based on heuristic

inferred from page(s)

published in

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29 November 2017

32

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29 November 2017

3

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29 November 2017

913-926

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On combining protein sequences and nucleic acid sequences in phylogenetic analysis: the homeobox protein case

29 November 2017

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2004.04.011

Functional Constraints and rbcL Evidence for Land Plant Phylogeny

7 January 2021

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Codon usage and base composition in Rickettsia prowazekii

7 January 2021

1 reference

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Phylogenetic relationships and evolution of the KNOTTED class of plant homeodomain proteins

7 January 2021

1 reference

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Mitochondrial gene order is not conserved in arthropods: prostriate and metastriate tick mitochondrial genomes.

7 January 2021

1 reference

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Substitution bias, rapid saturation, and the use of mtDNA for nematode systematics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2004.04.011

Quantification of homoplasy for nucleotide transitions and transversions and a reexamination of assumptions in weighted phylogenetic analysis

7 January 2021

1 reference

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Molecular evolution of the arthropod hemocyanin superfamily

7 January 2021

1 reference

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Molecular evolution of the wingless gene and its implications for the phylogenetic placement of the butterfly family Riodinidae (Lepidoptera: papilionoidea).

7 January 2021

1 reference

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Bias in phylogenetic reconstruction of vertebrate rhodopsin sequences.

7 January 2021

1 reference

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Effects of nucleotide composition bias on the success of the parsimony criterion in phylogenetic inference

7 January 2021

1 reference

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A phylogenetic assessment of the eukaryotic light-harvesting antenna proteins, with implications for plastid evolution

7 January 2021

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THE RETENTION INDEX AND THE RESCALED CONSISTENCY INDEX

7 January 2021

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Maximum Likelihood and Minimum-Steps Methods for Estimating Evolutionary Trees from Data on Discrete Characters

7 January 2021

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Nucleotide composition bias affects amino acid content in proteins coded by animal mitochondria.

7 January 2021

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A nuclear gene for higher level phylogenetics: phosphoenolpyruvate carboxykinase tracks mesozoic-age divergences within Lepidoptera (Insecta).

7 January 2021

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The Mostly Male Theory of Flower Evolutionary Origins: From Genes to Fossils

7 January 2021

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The Bryophyta (Mosses): Systematic and Evolutionary Inferences from an rps4 Gene (cpDNA) Phylogeny

7 January 2021

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Is it better to add taxa or characters to a difficult phylogenetic problem?

7 January 2021

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Directional mutational pressure affects the amino acid composition and hydrophobicity of proteins in bacteria

7 January 2021

1 reference

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Early branchings in the evolution of eukaryotes: ancient divergence of entamoeba that lacks mitochondria revealed by protein sequence data

7 January 2021

1 reference

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The 'evolutionary signal' of homoplasy in protein-coding gene sequences and its consequences for a priori weighting in phylogeny

7 January 2021

1 reference

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Inferring complex phylogenies.

7 January 2021

1 reference

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Taxonomic sampling, phylogenetic accuracy, and investigator bias

7 January 2021

1 reference

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Experimental Phylogenetics: Generation of a Known Phylogeny

7 January 2021

1 reference

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Identification of functional domains and evolution of Tc1-like transposable elements

7 January 2021

1 reference

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The Biasing Effect of Compositional Heterogeneity on Phylogenetic Estimates May be Underestimated

7 January 2021

1 reference

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Silent nucleotide substitutions and G + C content of some mitochondrial and bacterial genes

7 January 2021

1 reference

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A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

7 January 2021

1 reference

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Quantitative Phyletics and the Evolution of Anurans

7 January 2021

1 reference

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MEGA2: molecular evolutionary genetics analysis software

7 January 2021

1 reference

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Phylogenetic relationships of the liverworts (Hepaticae), a basal embryophyte lineage, inferred from nucleotide sequence data of the chloroplast gene rbcL.

7 January 2021

1 reference

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Endochitinase gene-based phylogenetic analysis of Trichoderma.

7 January 2021

1 reference

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Substitutional bias confounds inference of cyanelle origins from sequence data

7 January 2021

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Controversy on chloroplast origins

7 January 2021

1 reference

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Molecular phylogeny of Dictyostelium discoideum by protein sequence comparison

7 January 2021

1 reference

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Phylogenetic analysis of green plant rbcL sequences

7 January 2021

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The evolutionary origins of eukaryotic protein disulfide isomerase domains: new evidence from the Amitochondriate protist Giardia lamblia.

7 January 2021

1 reference

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Shortcomings of the cytochrome b gene as a molecular marker

7 January 2021

1 reference

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The Use of Nucleic Acid Sequence Data in Phylogenetic Reconstruction

7 January 2021

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Hydrophobicity and phylogeny

7 January 2021

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Measuring shifts in function and evolutionary opportunity using variability profiles: a case study of the globins

7 January 2021

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Ancient origin of lactalbumin from lysozyme: analysis of DNA and amino acid sequences

7 January 2021

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Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference

7 January 2021

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Fluctuating mutation bias and the evolution of base composition in Drosophila

7 January 2021

1 reference

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Heterogeneity of nucleotide frequencies among evolutionary lineages and phylogenetic inference.

7 January 2021

1 reference

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Amino acid vs. nucleotide characters: challenging preconceived notions

7 January 2021

1 reference

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Evolution, Weighting, and Phylogenetic Utility of Mitochondrial Gene Sequences and a Compilation of Conserved Polymerase Chain Reaction Primers

7 January 2021

1 reference

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Parsimony, likelihood, and the role of models in molecular phylogenetics.

7 January 2021

1 reference

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A New Algorithm for Generating All the Maximal Independent Sets

7 January 2021

1 reference

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Pandit: a database of protein and associated nucleotide domains with inferred trees.

7 January 2021

1 reference

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Phylogenetic relationships of bluetongue viruses based on gene S7.

7 January 2021

1 reference

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Directional substitution and evolution of nucleotide content in the cytochrome oxidase II gene in earwigs (dermapteran insects).

7 January 2021

1 reference

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On the best evolutionary rate for phylogenetic analysis.

7 January 2021

1 reference

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Archaeal phylogeny: reexamination of the phylogenetic position of Archaeoglobus fulgidus in light of certain composition-induced artifacts

7 January 2021

1 reference

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inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1016/J.YMPEV.2004.04.011

1 reference

29 November 2017

1 reference

PubMed ID

15288066