Elucidating a key intermediate in homologous DNA strand exchange: structural characterization of the RecA-triple-stranded DNA complex using fluorescence resonance energy transfer (Q44049725)

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scientific article published in July 2002

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English	Elucidating a key intermediate in homologous DNA strand exchange: structural characterization of the RecA-triple-stranded DNA complex using fluorescence resonance energy transfer	scientific article published in July 2002

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scholarly article

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Europe PubMed Central

PubMed publication ID

29 November 2017

Elucidating a key intermediate in homologous DNA strand exchange: structural characterization of the RecA-triple-stranded DNA complex using fluorescence resonance energy transfer (English)

1 reference

Europe PubMed Central

PubMed publication ID

29 November 2017

author name string

Jie Xiao

1

1 reference

Europe PubMed Central

PubMed publication ID

29 November 2017

Scott F Singleton

2

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Europe PubMed Central

PubMed publication ID

29 November 2017

language of work or name

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publication date

1 July 2002

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Europe PubMed Central

PubMed publication ID

29 November 2017

Journal of Molecular Biology

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Europe PubMed Central

PubMed publication ID

29 November 2017

320

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Europe PubMed Central

PubMed publication ID

29 November 2017

3

1 reference

Europe PubMed Central

PubMed publication ID

29 November 2017

529-558

1 reference

Europe PubMed Central

PubMed publication ID

29 November 2017

Homologous pairing and strand exchange in genetic recombination

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Characterization of a mutant strain of Saccharomyces cerevisiae with a deletion of the RAD27 gene, a structural homolog of the RAD2 nucleotide excision repair gene

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DNA strand exchange proteins: a biochemical and physical comparison.

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Visualization of RecA-DNA complexes involved in consecutive stages of an in vitro strand exchange reaction

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RecA-DNA helical complexes in genetic recombination.

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Structure of helical RecA-DNA complexes. Complexes formed in the presence of ATP-gamma-S or ATP.

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The location of DNA in RecA-DNA helical filaments.

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Elongation of duplex DNA by recA protein

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Characterization of complexes between recA protein and duplex DNA by electron microscopy

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The helicity of DNA in complexes with recA protein

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Studies of the interaction of RecA protein with DNA

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Extent of duplex DNA underwinding induced by RecA protein binding in the presence of ATP

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A molecular model for RecA-promoted strand exchange via parallel triple-stranded helices

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DNA stretching and compression: large-scale simulations of double helical structures

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Does a stretched DNA structure dictate the helical geometry of RecA-like filaments?

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Homologous genetic recombination as an intrinsic dynamic property of a DNA structure induced by RecA/Rad51-family proteins: a possible advantage of DNA over RNA as genomic material

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Domain structure and dynamics in the helical filaments formed by RecA and Rad51 on DNA.

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Radioprobing of a RecA-three-stranded DNA complex with iodine 125: evidence for recognition of homology in the major groove of the target duplex

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Fluorescence Energy Transfer as a Spectroscopic Ruler

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Fluorescence resonance energy transfer and nucleic acids

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Resonance energy transfer: methods and applications

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Fluorescence resonance energy transfer as a probe of DNA structure and function

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Recent advances in FRET: distance determination in protein-DNA complexes

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Kinetic analysis of pairing and strand exchange catalyzed by RecA. Detection by fluorescence energy transfer.

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Three mechanistic steps detected by FRET after presynaptic filament formation in homologous recombination. ATP hydrolysis required for release of oligonucleotide heteroduplex product from RecA.

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Polarity of DNA strand exchange promoted by recombination proteins of the RecA family

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A standard reference frame for the description of nucleic acid base-pair geometry.

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Observing the helical geometry of double-stranded DNA in solution by fluorescence resonance energy transfer

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Equilibrium binding of single-stranded DNA to the secondary DNA binding site of the bacterial recombinase RecA.

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Distribution of phospholipids around gramicidin and D-beta-hydroxybutyrate dehydrogenase as measured by resonance energy transfer

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Fluorescence energy transfer analysis of calmodulin-peptide complexes

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Fluorescence resonance energy transfer analysis of the structure of the four-way DNA junction

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Fluorescence resonance energy transfer within a heterochromatic cAMP-dependent protein kinase holoenzyme under equilibrium conditions: new insights into the conformational changes that result in cAMP-dependent activation

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Sensitive fluorescence-based thermodynamic and kinetic measurements of DNA hybridization in solution

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The solution structure of the four-way DNA junction at low-salt conditions: a fluorescence resonance energy transfer analysis

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Structural studies on folding intermediates of serine hydroxymethyltransferase using fluorescence resonance energy transfer

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Global structure of three-way DNA junctions with and without additional unpaired bases: a fluorescence resonance energy transfer analysis

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The helix-coil transition of DNA duplexes and hairpins observed by multiple fluorescence parameters

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Molecular Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic Acid

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Global structure similarities of intact and nicked DNA complexed with IHF measured in solution by fluorescence resonance energy transfer

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The orientational freedom of molecular probes. The orientation factor in intramolecular energy transfer

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The synapsis event in the homologous pairing of DNAs: RecA recognizes and pairs less than one helical repeat of DNA

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Efficient interaction of recA protein with fluorescent dye-labeled oligonucleotides

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Structure and function of RecA-DNA complexes.

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Stable DNA heteroduplex formation catalyzed by the Escherichia coli RecA protein in the absence of ATP hydrolysis

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The structure of the E. coli recA protein monomer and polymer

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Structural data suggest that the active and inactive forms of the RecA filament are not simply interconvertible

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Electron microscopic visualization of recA-DNA filaments: evidence for a cyclic extension of duplex DNA

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Single strands induce recA protein to unwind duplex DNA for homologous pairing

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Electron microscopy can be used to measure DNA supertwisting

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Effects of minor and major groove-binding drugs and intercalators on the DNA association of minor groove-binding proteins RecA and deoxyribonuclease I detected by flow linear dichroism

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Local DNA stretching mimics the distortion caused by the TATA box-binding protein

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Minor groove-binding architectural proteins: structure, function, and DNA recognition.

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The specificity of the secondary DNA binding site of RecA protein defines its role in DNA strand exchange

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In vitro selection of preferred DNA pairing sequences by the Escherichia coli RecA protein.

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Second-Site RecA−DNA Interactions: Lack of Identical Recognition

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Thermochemical and kinetic evidence for nucleotide-sequence-dependent RecA-DNA interactions.

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Effects of DNA sequence and structure on binding of RecA to single-stranded DNA.

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Influence of DNA sequence on the positioning of RecA monomers in RecA-DNA cofilaments

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RecA as a motor protein. Testing models for the role of ATP hydrolysis in DNA strand exchange

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Role of RecA protein spiral filaments in genetic recombination

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RecA-like recombination proteins in eukaryotes: functions and structures of RAD51 genes

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A parallel DNA triplex as a model for the intermediate in homologous recombination.

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Homologous recombination proteins in prokaryotes and eukaryotes

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An extended DNA structure through deoxyribose-base stacking induced by RecA protein

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Homology-dependent underwinding of duplex DNA in recA protein generated paranemic complexes.

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Unwinding of heterologous DNA by RecA protein during the search for homologous sequences

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Helical repeat of DNA in the region of homologous pairing

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The duplex DNA is very underwound in the three-stranded RecA protein-mediated synaptic complex

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Why does RecA protein hydrolyse ATP?

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Evidence for the coupling of ATP hydrolysis to the final (extension) phase of RecA protein-mediated DNA strand exchange.

1 reference

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Stable synapsis of homologous DNA molecules mediated by the Escherichia coli RecA protein involves local exchange of DNA strands

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7 January 2021

RecA.oligonucleotide filaments bind in the minor groove of double-stranded DNA.

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Sequence-specific covalent modification of DNA by cross-linking oligonucleotides. Catalysis by RecA and implication for the mechanism of synaptic joint formation

1 reference

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DNA strand exchange mediated by the Escherichia coli RecA protein initiates in the minor groove of double-stranded DNA.

1 reference

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Periodicity in recA protein-DNA complexes

1 reference

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The function of the secondary DNA-binding site of RecA protein during DNA strand exchange

1 reference

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Interactions of three strands in joints made by RecA protein.

1 reference

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Range of radiochemical damage to DNA with decay of iodine-125.

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Design and evaluation of a tryptophanless RecA protein with wild type activity

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Characterization of fluorescein-oligonucleotide conjugates and measurement of local electrostatic potential

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Properties of the high-affinity single-stranded DNA binding state of the Escherichia coli recA protein

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RecA protein filaments: end-dependent dissociation from ssDNA and stabilization by RecO and RecR proteins

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Identifiers

10.1016/S0022-2836(02)00462-X

1 reference

Europe PubMed Central

PubMed publication ID

29 November 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

29 November 2017

ResearchGate publication ID

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