OrthoMaM v8: a database of orthologous exons and coding sequences for comparative genomics in mammals (Q44193254)

30 November 2017

OrthoMaM v8: a database of orthologous exons and coding sequences for comparative genomics in mammals (English)

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30 November 2017

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6

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30 November 2017

1

Emmanuel J P Douzery

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30 November 2017

2

Celine Scornavacca

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30 November 2017

7

Vincent Ranwez

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30 November 2017

Jonathan Romiguier

3

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PubMed ID

24723423

30 November 2017

Khalid Belkhir

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4

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PubMed ID

24723423

30 November 2017

Nicolas Galtier

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5

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30 November 2017

9 April 2014

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Molecular Biology and Evolution

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31

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1923-1928

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Overview and comparison of ortholog databases

30 November 2017

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

Basic local alignment search tool

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

GreenPhylDB: a database for plant comparative genomics

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases.

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

IDEA: Interactive Display for Evolutionary Analyses

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

GC-biased gene conversion promotes the fixation of deleterious amino acid changes in primates.

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

CodonPhyML: fast maximum likelihood phylogeny estimation under codon substitution models.

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

Combining multiple autosomal introns for studying shallow phylogeny and taxonomy of Laurasiatherian mammals: Application to the tribe Bovini (Cetartiodactyla, Bovidae).

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

OPTIC: orthologous and paralogous transcripts in clades

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

Development and application of a phylogenomic toolkit: resolving the evolutionary history of Madagascar's lemurs

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

An evolutionary genome scan for longevity-related natural selection in mammals

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

MAFFT version 5: improvement in accuracy of multiple sequence alignment

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

Evolutionary and functional analyses of the interaction between the myeloid restriction factor SAMHD1 and the lentiviral Vpx protein

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

Phylogenetic patterns of GC-biased gene conversion in placental mammals and the evolutionary dynamics of recombination landscapes

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

The importance of proper model assumption in bayesian phylogenetics.

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

EvolMarkers: a database for mining exon and intron markers for evolution, ecology and conservation studies

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

A practical approach to phylogenomics: the phylogeny of ray-finned fish (Actinopterygii) as a case study

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

Model averaging and Bayes factor calculation of relaxed molecular clocks in Bayesian phylogenetics

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

PhyDesign: an online application for profiling phylogenetic informativeness

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

FUNYBASE: a FUNgal phYlogenomic dataBASE

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

OrthoDisease: a database of human disease orthologs

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

InParanoid 7: new algorithms and tools for eukaryotic orthology analysis

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

Genome-wide signatures of convergent evolution in echolocating mammals

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

INVHOGEN: a database of homologous invertebrate genes

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

HOBACGEN: database system for comparative genomics in bacteria

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

SuperTriplets: a triplet-based supertree approach to phylogenomics

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

OrthoMaM: a database of orthologous genomic markers for placental mammal phylogenetics

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

Fast and robust characterization of time-heterogeneous sequence evolutionary processes using substitution mapping

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

Less is more in mammalian phylogenomics: AT-rich genes minimize tree conflicts and unravel the root of placental mammals

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

Contrasting GC-content dynamics across 33 mammalian genomes: relationship with life-history traits and chromosome sizes

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

Protein structural modularity and robustness are associated with evolvability.

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

The precision of the hominid timescale estimated by relaxed clock methods

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

PhySIC_IST: cleaning source trees to infer more informative supertrees

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

The COG database: an updated version includes eukaryotes

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

Bayesian selection of nucleotide substitution models and their site assignments

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

Among-site rate variation and its impact on phylogenetic analyses

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

Developing a series of conservative anchor markers and their application to phylogenomics of Laurasiatherian mammals

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU132

21 January 2018

Identifiers

DOI

10.1093/MOLBEV/MSU132

1 reference

30 November 2017

1 reference

PubMed ID

24723423