A molecular mechanics investigation of RNA complexes. I. Ethidium intercalation in an HIV-1 TAR RNA sequence with an unpaired adenosine (Q45143594)

10 December 2017

title

A molecular mechanics investigation of RNA complexes. I. Ethidium intercalation in an HIV-1 TAR RNA sequence with an unpaired adenosine (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1466814

29 September 2022

main subject

HIV long terminal repeat

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1466814

29 September 2022

author name string

S. Yao

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1466814

29 September 2022

W. D. Wilson

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1466814

29 September 2022

language of work or name

English

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=1466814

29 September 2022

publication date

1 October 1992

1 reference

Journal of Biomolecular Structure and Dynamics

10 December 2017

published in

1 reference

10 December 2017

volume

10

1 reference

10 December 2017

issue

2

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10 December 2017

page(s)

367-387

1 reference

The biochemistry of AIDS.

10 December 2017

cites work

1 reference

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Role of a bulged A residue in a specific RNA-protein interaction

21 January 2018

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Fragments of the HIV-1 Tat protein specifically bind TAR RNA.

21 January 2018

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Arginine-mediated RNA recognition: the arginine fork.

21 January 2018

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RNA recognition by Tat-derived peptides: interaction in the major groove?

21 January 2018

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HIV-1 tat trans-activation requires the loop sequence within tar.

21 January 2018

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Stability of RNA stem-loop structure and distribution of non-random structure in the human immunodeficiency virus (HIV-I).

21 January 2018

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Structural features in TAR RNA of human and simian immunodeficiency viruses: a phylogenetic analysis

21 January 2018

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An ethidium analogue that binds with high specificity to a base-bulged duplex from the TAR RNA region of the HIV-I genome

21 January 2018

1 reference

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Ethidium ion binds more strongly to a DNA double helix with a bulged cytosine than to a regular double helix

21 January 2018

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Binding of 9-aminoacridine to bulged-base DNA oligomers from a frame-shift hot spot

21 January 2018

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Selective strand scission by intercalating drugs at DNA bulges

21 January 2018

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Single base bulges in small RNA hairpins enhance ethidium binding and promote an allosteric transition

21 January 2018

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Effects of single-base bulges on intercalator binding to small RNA and DNA hairpins and a ribosomal RNA fragment.

21 January 2018

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Optimised parameters for RNA double-helices

21 January 2018

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Extrahelical adenosine stacks into right-handed DNA: solution conformation of the d(C-G-C-A-G-A-G-C-T-C-G-C-G) duplex deduced from distance geometry analysis of nuclear Overhauser effect spectra.

21 January 2018

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Two-dimensional 1H and 31P NMR spectra and restrained molecular dynamics structure of an extrahelical adenosine tridecamer oligodeoxyribonucleotide duplex

21 January 2018

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Comparative NMR study of An-bulge loops in DNA duplexes: intrahelical stacking of A, A-A, and A-A-A bulge loops

21 January 2018

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An all atom force field for simulations of proteins and nucleic acids

21 January 2018

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Ethidium bromide complexes with self-complementary deoxytetranucleotides. Demonstration and discussion of sequence preferences in the intercalative binding of ethidium bromide

21 January 2018

1 reference

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The three-dimensional structure of a DNA duplex containing looped-out bases

21 January 2018

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Crystal structure of 15-mer DNA duplex containing unpaired bases

21 January 2018

1 reference

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10.1080/07391102.1992.10508653

21 January 2018

Identifiers

DOI

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10 December 2017

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