The palm subdomain-based active site is internally permuted in viral RNA-dependent RNA polymerases of an ancient lineage (Q45254169)

11 December 2017

The palm subdomain-based active site is internally permuted in viral RNA-dependent RNA polymerases of an ancient lineage (English)

1 reference

11 December 2017

Vernon K Ward

9

0 references

Alexander E. Gorbalenya

object named as

Alexander E Gorbalenya

1

0 references

Craig E. Cameron

5

object named as

Craig E Cameron

1 reference

11 December 2017

Fiona M Pringle

2

1 reference

11 December 2017

Jean-Louis Zeddam

3

1 reference

11 December 2017

Brian T Luke

4

1 reference

11 December 2017

James Kalmakoff

6

1 reference

11 December 2017

Terry N Hanzlik

7

1 reference

11 December 2017

Karl H J Gordon

8

1 reference

11 December 2017

language of work or name

English

0 references

publication date

1 November 2002

1 reference

Journal of Molecular Biology

11 December 2017

1 reference

11 December 2017

324

1 reference

11 December 2017

1

1 reference

11 December 2017

47-62

1 reference

Structure of large fragment of Escherichia coli DNA polymerase I complexed with dTMP

11 December 2017

1 reference

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Crystal structure of the RNA-dependent RNA polymerase of hepatitis C virus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901033-1

A mechanism for initiating RNA-dependent RNA polymerization

7 January 2021

1 reference

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An attempt to unify the structure of polymerases

7 January 2021

1 reference

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Structure of the RNA-dependent RNA polymerase of poliovirus

7 January 2021

1 reference

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Crystal structure of the RNA-dependent RNA polymerase from hepatitis C virus reveals a fully encircled active site

7 January 2021

1 reference

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DNA polymerases: structural diversity and common mechanisms

7 January 2021

1 reference

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Crystal structures of active and inactive conformations of a caliciviral RNA-dependent RNA polymerase

7 January 2021

1 reference

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Identification of four conserved motifs among the RNA-dependent polymerase encoding elements

7 January 2021

2 references

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7 January 2021

12 December 2020

Analysis of RNA-dependent RNA polymerase structure and function as guided by known polymerase structures and computer predictions of secondary structure

1 reference

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A Hypothesis for DNA Viruses as the Origin of Eukaryotic Replication Proteins

7 January 2021

1 reference

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Origin and evolution of retroelements based upon their reverse transcriptase sequences

7 January 2021

2 references

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7 January 2021

12 December 2020

Crystal structure of a pol alpha family replication DNA polymerase from bacteriophage RB69

1 reference

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Poliovirus RNA-dependent RNA polymerase (3Dpol): structural, biochemical, and biological analysis of conserved structural motifs A and B

7 January 2021

1 reference

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A sequence motif in many polymerases

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901033-1

Relationships among the positive strand and double-strand RNA viruses as viewed through their RNA-dependent RNA polymerases

7 January 2021

1 reference

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The phylogeny of RNA-dependent RNA polymerases of positive-strand RNA viruses

7 January 2021

1 reference

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7 January 2021

Evolution of RNA viruses

1 reference

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A novel capsid expression strategy for Thosea asigna virus (Tetraviridae).

7 January 2021

1 reference

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Biochemistry and immunology of infectious bursal disease virus

7 January 2021

1 reference

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Analysis of the capsid processing strategy of Thosea asigna virus using baculovirus expression of virus-like particles

7 January 2021

1 reference

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Birnavirus RNA polymerase is related to polymerases of positive strand RNA viruses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901033-1

Sequence analysis of infectious pancreatic necrosis virus genome segment B and its encoded VP1 protein: a putative RNA-dependent RNA polymerase lacking the Gly-Asp-Asp motif

7 January 2021

1 reference

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Synthetic transcripts of double-stranded Birnavirus genome are infectious

7 January 2021

1 reference

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Sequence of the genomic RNA of nudaurelia beta virus (Tetraviridae) defines a novel virus genome organization

7 January 2021

1 reference

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The larger genomic RNA of Helicoverpa armigera stunt tetravirus encodes the viral RNA polymerase and has a novel 3'-terminal tRNA-like structure

7 January 2021

1 reference

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7 January 2021

1 reference

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Coronavirus genome: prediction of putative functional domains in the non-structural polyprotein by comparative amino acid sequence analysis.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901033-1

Circular permutations of natural protein sequences: structural evidence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901033-1

Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901033-1

Circularly permuted proteins

7 January 2021

1 reference

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Naturally occurring circular permutations in proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901033-1

Circularly permuted proteins in the protein structure database

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901033-1

Protein fold irregularities that hinder sequence analysis.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901033-1

Probable reassortment of genomic elements among elongated RNA-containing plant viruses

7 January 2021

1 reference

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A non-canonical lon proteinase lacking the ATPase domain employs the ser-Lys catalytic dyad to exercise broad control over the life cycle of a double-stranded RNA virus

7 January 2021

1 reference

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FUNCTIONS OF THE 3'-UNTRANSLATED REGIONS OF POSITIVE STRAND RNA VIRAL GENOMES.

7 January 2021

1 reference

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7 January 2021

Genetics of poliovirus

1 reference

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The 'cleavage' activities of foot-and-mouth disease virus 2A site-directed mutants and naturally occurring '2A-like' sequences

7 January 2021

1 reference

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Birnavirus VP1 proteins form a distinct subgroup of RNA-dependent RNA polymerases lacking a GDD motif

7 January 2021

1 reference

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Molecular characterization of pestiviruses

7 January 2021

1 reference

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Crystal structure of a prokaryotic aspartyl tRNA-synthetase.

7 January 2021

1 reference

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SCOP: a structural classification of proteins database for the investigation of sequences and structures

7 January 2021

1 reference

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DNA polymerase beta belongs to an ancient nucleotidyltransferase superfamily

7 January 2021

1 reference

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RNA-dependent RNA polymerases, viruses, and RNA silencing

7 January 2021

1 reference

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CDD: a database of conserved domain alignments with links to domain three-dimensional structure

7 January 2021

1 reference

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The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

7 January 2021

1 reference

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DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment

7 January 2021

1 reference

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Position-based sequence weights

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901033-1

JPred: a consensus secondary structure prediction server

7 January 2021

2 references

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901033-1

7 January 2021

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901033-1

7 January 2021

inferred from DOI database lookup

Application of multiple sequence alignment profiles to improve protein secondary structure prediction

1 reference

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Protein secondary structure prediction based on position-specific scoring matrices

7 January 2021

1 reference

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The PSIPRED protein structure prediction server

7 January 2021

1 reference

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

7 January 2021

1 reference

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Evolution of domain families

7 January 2021

1 reference

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WHAT IF: a molecular modeling and drug design program

7 January 2021

1 reference

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A simple algorithm for detecting circular permutations in proteins

7 January 2021

1 reference

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Computer-assisted assignment of functional domains in the nonstructural polyprotein of hepatitis E virus: delineation of an additional group of positive-strand RNA plant and animal viruses

7 January 2021

1 reference

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A novel virus in swine is closely related to the human hepatitis E virus

7 January 2021

1 reference

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The complete genome sequence of gill-associated virus of Penaeus monodon prawns indicates a gene organisation unique among nidoviruses

7 January 2021

1 reference

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A reevaluation of the higher taxonomy of viruses based on RNA polymerases

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901033-1

7 January 2021

inferred from DOI database lookup

Big nidovirus genome. When count and order of domains matter.

1 reference

12 December 2020

Expression of animal virus genomes

1 reference

12 December 2020

Improved sensitivity of profile searches through the use of sequence weights and gap excision.

1 reference

12 December 2020

Nidovirales: a new order comprising Coronaviridae and Arteriviridae

1 reference

12 December 2020

The neighbor-joining method: a new method for reconstructing phylogenetic trees

1 reference

12 December 2020

Mutation of the aspartic acid residues of the GDD sequence motif of poliovirus RNA-dependent RNA polymerase results in enzymes with altered metal ion requirements for activity

1 reference

12 December 2020

Generation of infectious pancreatic necrosis virus from cloned cDNA

1 reference

12 December 2020

Comparison of the replication of positive-stranded RNA viruses of plants and animals

1 reference

12 December 2020

TreeView: an application to display phylogenetic trees on personal computers

1 reference

12 December 2020

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901033-1

1 reference

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1016/S0022-2836(02)01033-1

1 reference

release_zr6opbsfibb3po7xaddli46mhm

11 December 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/zr6opbsfibb3po7xaddli46mhm

24 November 2022

mapped directly with Wikidata item

0 references

1 reference