Widespread adaptive evolution in the human immunodeficiency virus type 1 genome (Q45710774)

15 December 2017

Widespread adaptive evolution in the human immunodeficiency virus type 1 genome (English)

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15 December 2017

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2

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15 December 2017

Wa Yang

1

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PubMed ID

14562964

15 December 2017

Ziheng Yang

series ordinal

3

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15 December 2017

1 August 2003

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Journal of Molecular Evolution

15 December 2017

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15 December 2017

57

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15 December 2017

2

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15 December 2017

212-221

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https://scigraph.springernature.com/pub.10.1007/s00239-003-2467-9

15 December 2017

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cites work

Molecular clock of viral evolution, and the neutral theory

1 reference

12 December 2020

Codon-substitution models for heterogeneous selection pressure at amino acid sites

1 reference

12 December 2020

Fine specificity of antibody recognition may predict amino acid substitution in the third variable region of gp120 during HIV type 1 infection

1 reference

12 December 2020

Estimating mutation rate and generation time from longitudinal samples of DNA sequences

1 reference

12 December 2020

Positive selection and interallelic recombination at the merozoite surface antigen-1 (MSA-1) locus of Plasmodium falciparum

1 reference

12 December 2020

WebMol--a Java-based PDB viewer.

1 reference

12 December 2020

Parallel evolution of drug resistance in HIV: failure of nonsynonymous/synonymous substitution rate ratio to detect selection

1 reference

12 December 2020

Immune-mediated positive selection drives human immunodeficiency virus type 1 molecular variation and predicts disease duration.

1 reference

12 December 2020

Genealogical evidence for positive selection in the nef gene of HIV-1

1 reference

12 December 2020

A codon-based model of nucleotide substitution for protein-coding DNA sequences

1 reference

12 December 2020

Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene

1 reference

12 December 2020

A simple method for displaying the hydropathic character of a protein

1 reference

12 December 2020

The genetic code and error transmission

1 reference

12 December 2020

HIV-1 variation diminishes CD4 T lymphocyte recognition.

1 reference

12 December 2020

Estimating the influence of selection on the variable amino acid sites of the cytochrome B protein functional domains

1 reference

12 December 2020

Immunodominant glycoprotein 41 epitope identified by seroreactivity in HIV type 1-infected individuals

1 reference

12 December 2020

Maximum likelihood analysis of adaptive evolution in HIV-1 gp120 env gene

1 reference

12 December 2020

Evolution of the human immunodeficiency virus type 1 subtype-specific V3 domain is confined to a sequence space with a fixed distance to the subtype consensus.

1 reference

12 December 2020

Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

1 reference

12 December 2020

In search of molecular darwinism

1 reference

12 December 2020

Analysis of HIV-1 env gene sequences reveals evidence for a low effective number in the viral population

1 reference

12 December 2020

Positive Darwinian selection drives the evolution of several female reproductive proteins in mammals

1 reference

12 December 2020

Virus-specific cytotoxic T-lymphocyte responses select for amino-acid variation in simian immunodeficiency virus Env and Nef.

1 reference

12 December 2020

Primary virus envelope cross-reactivity of the broadening neutralizing antibody response during early chronic human immunodeficiency virus type 1 infection.

1 reference

12 December 2020

Natural selection on the gag, pol, and env genes of human immunodeficiency virus 1 (HIV-1).

1 reference

12 December 2020

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

1 reference

12 December 2020

Evidence for positive selection in the capsid protein-coding region of the foot-and-mouth disease virus (FMDV) subjected to experimental passage regimens

1 reference

12 December 2020

High genomic deleterious mutation rates in hominids

1 reference

12 December 2020

Evidence for positive selection in foot-and-mouth disease virus capsid genes from field isolates

1 reference

12 December 2020

Multiple effector functions mediated by human immunodeficiency virus-specific CD4(+) T-cell clones

1 reference

12 December 2020

Cellular immune responses and viral diversity in individuals treated during acute and early HIV-1 infection.

1 reference

12 December 2020

Genomic and biological alteration of a human immunodeficiency virus type 1 (HIV-1)-simian immunodeficiency virus strain mac chimera, with HIV-1 Env, recovered from a long-term carrier monkey

1 reference

12 December 2020

CD4+ T cells: The great escape

1 reference

12 December 2020

Genetic drift can dominate short-term human immunodeficiency virus type 1 nef quasispecies evolution in vivo

1 reference

12 December 2020

Reversal of human immunodeficiency virus type 1 IIIB to a neutralization-resistant phenotype in an accidentally infected laboratory worker with a progressive clinical course

1 reference

12 December 2020

Positive Darwinian selection promotes charge profile diversity in the antigen-binding cleft of class I major-histocompatibility-complex molecules

1 reference

12 December 2020

High rate of recombination throughout the human immunodeficiency virus type 1 genome

1 reference

12 December 2020

Reevaluation of amino acid variability of the human immunodeficiency virus type 1 gp120 envelope glycoprotein and prediction of new discontinuous epitopes

1 reference

12 December 2020

Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution

1 reference

12 December 2020

The molecular evolution of signal peptides.

1 reference

12 December 2020

Evolutionary changes in mutation rates and spectra and their influence on the adaptation of pathogens

1 reference

12 December 2020

Immune control of HIV-1 after early treatment of acute infection

1 reference

12 December 2020

RNA virus mutations and fitness for survival

1 reference

12 December 2020

The interaction of protein structure, selection, and recombination on the evolution of the type-1 fimbrial major subunit (fimA) from Escherichia coli.

1 reference

12 December 2020

Different effects of a single amino acid substitution on three adjacent epitopes in the gp41 C-terminal tail of a neutralizing antibody escape mutant of human immunodeficiency virus type 1.

1 reference

12 December 2020

Escape from the immune system

1 reference

12 December 2020

Accuracy and power of bayes prediction of amino acid sites under positive selection

1 reference

12 December 2020

Characterizing sequence variation in the VP1 capsid proteins of foot and mouth disease virus (serotype 0) with respect to virion structure

1 reference

12 December 2020

Amino acid difference formula to help explain protein evolution

1 reference

12 December 2020

Tat-specific cytotoxic T lymphocytes select for SIV escape variants during resolution of primary viraemia

1 reference

12 December 2020

1 reference

12 December 2020

10.1007/S00239-003-2467-9

Identifiers

DOI

1 reference

PubMed ID

14562964

Dimensions Publication ID

15 December 2017

0 references

1 reference

PubMed ID

14562964