Metropolis Monte Carlo calculations of DNA structure using internal coordinates and NMR distance restraints: an alternative method for generating a high-resolution solution structure. (Q45931548)

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scientific article published in September 1993

Language	Label	Description	Also known as
English	Metropolis Monte Carlo calculations of DNA structure using internal coordinates and NMR distance restraints: an alternative method for generating a high-resolution solution structure.	scientific article published in September 1993

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

17 December 2017

http://europepmc.org/abstract/MED/8219740

Metropolis Monte Carlo calculations of DNA structure using internal coordinates and NMR distance restraints: an alternative method for generating a high-resolution solution structure. (English)

1 reference

Europe PubMed Central

PubMed publication ID

17 December 2017

http://europepmc.org/abstract/MED/8219740

author name string

N B Ulyanov

1

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Europe PubMed Central

PubMed publication ID

17 December 2017

http://europepmc.org/abstract/MED/8219740

U Schmitz

2

1 reference

Europe PubMed Central

PubMed publication ID

17 December 2017

http://europepmc.org/abstract/MED/8219740

T L James

3

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Europe PubMed Central

PubMed publication ID

17 December 2017

http://europepmc.org/abstract/MED/8219740

language of work or name

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publication date

1 September 1993

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Europe PubMed Central

PubMed publication ID

17 December 2017

http://europepmc.org/abstract/MED/8219740

Journal of Biomolecular NMR

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Europe PubMed Central

PubMed publication ID

17 December 2017

http://europepmc.org/abstract/MED/8219740

3

1 reference

Europe PubMed Central

PubMed publication ID

17 December 2017

http://europepmc.org/abstract/MED/8219740

5

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Europe PubMed Central

PubMed publication ID

17 December 2017

http://europepmc.org/abstract/MED/8219740

547-568

1 reference

Europe PubMed Central

PubMed publication ID

17 December 2017

http://europepmc.org/abstract/MED/8219740

Simulation of interactions between nucleic acid bases by refined atom-atom potential functions

1 reference

https://pubmed.ncbi.nlm.nih.gov/8219740

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Protein solution structure determination using distances from two-dimensional nuclear Overhauser effect experiments: effect of approximations on the accuracy of derived structures

1 reference

https://pubmed.ncbi.nlm.nih.gov/8219740

12 December 2020

based on heuristic

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Sequence-dependent anisotropic flexibility of B-DNA. A conformational study

1 reference

https://pubmed.ncbi.nlm.nih.gov/8219740

12 December 2020

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Two-dimensional nuclear Overhauser effect: complete relaxation matrix analysis.

1 reference

https://pubmed.ncbi.nlm.nih.gov/8219740

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Solution structure of the EcoRI DNA octamer containing 5-fluorouracil via restrained molecular dynamics using distance and torsion angle constraints extracted from NMR spectral simulations

1 reference

https://pubmed.ncbi.nlm.nih.gov/8219740

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Solution structure of the TnAn DNA duplex GCCGTTAACGCG containing the HpaI restriction site

1 reference

https://pubmed.ncbi.nlm.nih.gov/8219740

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Time-averaged nuclear Overhauser effect distance restraints applied to tendamistat

1 reference

https://pubmed.ncbi.nlm.nih.gov/8219740

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Refinement of the thrombin-bound structure of a hirudin peptide by a restrained electrostatically driven Monte Carlo method

1 reference

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Distance geometry and related methods for protein structure determination from NMR data

1 reference

https://pubmed.ncbi.nlm.nih.gov/8219740

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Systematic study of nuclear Overhauser effects vis-à-vis local helical parameters, sugar puckers, and glycosidic torsions in B DNA: insensitivity of NOE to local transitions in B DNA oligonucleotides due to internal structural compensations

1 reference

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Spatial configuration of ordered polynucleotide chains: a novel double helix

1 reference

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Solution structure of a DNA octamer containing the Pribnow box via restrained molecular dynamics simulation with distance and torsion angle constraints derived from two-dimensional nuclear magnetic resonance spectral fitting

1 reference

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The fine structure of two DNA dodecamers containing the cAMP responsive element sequence and its inverse. Nuclear magnetic resonance and molecular simulation studies.

1 reference

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Conformational flexibility of DNA: polymorphism and handedness

1 reference

https://pubmed.ncbi.nlm.nih.gov/8219740

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Structure refinement of oligonucleotides by molecular dynamics with nuclear Overhauser effect interproton distance restraints: application to 5' d(C-G-T-A-C-G)2.

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A potential gene target in HIV-1: rationale, selection of a conserved sequence, and determination of NMR distance and torsion angle constraints

1 reference

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Static and statistical bending of DNA evaluated by Monte Carlo simulations

1 reference

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Are time-averaged restraints necessary for nuclear magnetic resonance refinement? A model study for DNA.

1 reference

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Refinement of the solution structure of the DNA decamer 5'd(CTGGATCCAG)2: combined use of nuclear magnetic resonance and restrained molecular dynamics

1 reference

https://pubmed.ncbi.nlm.nih.gov/8219740

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The octamer motif in immunoglobulin genes: extraction of structural constraints from two-dimensional NMR studies

1 reference

https://pubmed.ncbi.nlm.nih.gov/8219740

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Effects of limited input distance constraints upon the distance geometry algorithm.

1 reference

https://pubmed.ncbi.nlm.nih.gov/8219740

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Conformational analysis of the sugar ring in nucleosides and nucleotides. New description using the concept of pseudorotation

1 reference

https://pubmed.ncbi.nlm.nih.gov/8219740

12 December 2020

based on heuristic

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Solution structures of proteins from NMR data and modeling: alternative folds for neutrophil peptide 5.

1 reference

https://pubmed.ncbi.nlm.nih.gov/8219740

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Solution structure of phage lambda half-operator DNA by use of NMR, restrained molecular dynamics, and NOE-based refinement

1 reference

https://pubmed.ncbi.nlm.nih.gov/8219740

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Structure determination of [d(ATATATAUAT)]2 via two-dimensional NOE spectroscopy and molecular dynamics calculations.

1 reference

https://pubmed.ncbi.nlm.nih.gov/8219740

12 December 2020

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Identifiers

10.1007/BF00174609

1 reference

Europe PubMed Central

PubMed publication ID

17 December 2017

http://europepmc.org/abstract/MED/8219740

Dimensions Publication ID

0 references

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

17 December 2017

http://europepmc.org/abstract/MED/8219740

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