DnaN clamp zones provide a platform for spatiotemporal coupling of mismatch detection to DNA replication. (Q45962906)

13 June 2018

title

DnaN clamp zones provide a platform for spatiotemporal coupling of mismatch detection to DNA replication. (English)

1 reference

13 June 2018

author name string

Justin S Lenhart

1

1 reference

13 June 2018

Anushi Sharma

2

1 reference

13 June 2018

Manju M Hingorani

3

1 reference

13 June 2018

Lyle A Simmons

4

1 reference

13 June 2018

language of work or name

English

0 references

publication date

11 December 2012

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13 June 2018

published in

Molecular Microbiology

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13 June 2018

volume

87

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13 June 2018

issue

3

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13 June 2018

page(s)

553-568

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13 June 2018

Far Western blotting as a rapid and efficient method for detecting interactions between DNA replication and DNA repair proteins

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Residues in the N-terminal domain of MutL required for mismatch repair in Bacillus subtilis

14 June 2018

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Mismatch repair causes the dynamic release of an essential DNA polymerase from the replication fork

14 June 2018

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14 June 2018

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The endonuclease domain of MutL interacts with the β sliding clamp

14 June 2018

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Bacterial hypermutation in cystic fibrosis, not only for antibiotic resistance

14 June 2018

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PCNA function in the activation and strand direction of MutLα endonuclease in mismatch repair

14 June 2018

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14 June 2018

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14 June 2018

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Mutations in the Bacillus subtilis beta clamp that separate its roles in DNA replication from mismatch repair.

14 June 2018

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Polymorphic mutation frequencies of clinical and environmental Stenotrophomonas maltophilia populations.

14 June 2018

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Saccharomyces cerevisiae Msh2-Msh6 DNA binding kinetics reveal a mechanism of targeting sites for DNA mismatch repair

14 June 2018

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Involvement of the beta clamp in methyl-directed mismatch repair in vitro.

14 June 2018

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Recruitment of SMC by ParB-parS organizes the origin region and promotes efficient chromosome segregation

14 June 2018

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Fluctuation analysis CalculatOR: a web tool for the determination of mutation rate using Luria-Delbruck fluctuation analysis

14 June 2018

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Comparison of responses to double-strand breaks between Escherichia coli and Bacillus subtilis reveals different requirements for SOS induction

14 June 2018

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Mechanism of MutS searching for DNA mismatches and signaling repair

14 June 2018

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Genetic adaptation of Pseudomonas aeruginosa to the airways of cystic fibrosis patients is catalyzed by hypermutation

14 June 2018

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Beta clamp directs localization of mismatch repair in Bacillus subtilis

14 June 2018

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Structure of a Sliding Clamp on DNA

14 June 2018

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The N terminus of Saccharomyces cerevisiae Msh6 is an unstructured tether to PCNA

14 June 2018

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Replication is required for the RecA localization response to DNA damage in Bacillus subtilis

14 June 2018

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The effects of nucleotides on MutS-DNA binding kinetics clarify the role of MutS ATPase activity in mismatch repair

14 June 2018

1 reference

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Methods for determining spontaneous mutation rates

14 June 2018

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DNA mismatch repair: functions and mechanisms

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

The MutS C terminus is essential for mismatch repair activity in vivo

14 June 2018

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14 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

Structural analysis of a eukaryotic sliding DNA clamp-clamp loader complex

14 June 2018

1 reference

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Dynamics of long-term colonization of respiratory tract by Haemophilus influenzae in cystic fibrosis patients shows a marked increase in hypermutable strains

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

DNA mismatch repair: molecular mechanisms and biological function

14 June 2018

1 reference

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Evidence for Preferential Mismatch Repair of Lagging Strand DNA Replication Errors in Yeast

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

High frequency of mutator strains among human uropathogenic Escherichia coli isolates.

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

The Phe-X-Glu DNA binding motif of MutS. The role of hydrogen bonding in mismatch recognition

14 June 2018

1 reference

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A universal protein-protein interaction motif in the eubacterial DNA replication and repair systems.

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

Crystal structure of the processivity clamp loader gamma (gamma) complex of E. coli DNA polymerase III

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

hMSH3 and hMSH6 interact with PCNA and colocalize with it to replication foci

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

Crystal structure of an archaeal DNA sliding clamp: proliferating cell nuclear antigen from Pyrococcus furiosus

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

Proliferating cell nuclear antigen and Msh2p-Msh6p interact to form an active mispair recognition complex

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

The crystal structure of DNA mismatch repair protein MutS binding to a G x T mismatch

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

Crystal structures of mismatch repair protein MutS and its complex with a substrate DNA

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

Functional interaction of proliferating cell nuclear antigen with MSH2-MSH6 and MSH2-MSH3 complexes

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

Analysis of yeast MSH2-MSH6 suggests that the initiation of mismatch repair can be separated into discrete steps

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

14 June 2018

DNA replication fidelity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

High frequency of hypermutable Pseudomonas aeruginosa in cystic fibrosis lung infection.

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

Evolutionary origin, diversification and specialization of eukaryotic MutS homolog mismatch repair proteins

14 June 2018

1 reference

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Localization of bacterial DNA polymerase: evidence for a factory model of replication

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

ATP-dependent interaction of human mismatch repair proteins and dual role of PCNA in mismatch repair

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

hMSH2 forms specific mispair-binding complexes with hMSH3 and hMSH6

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

Requirement for PCNA in DNA mismatch repair at a step preceding DNA resynthesis

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

Binding of insertion/deletion DNA mismatches by the heterodimer of yeast mismatch repair proteins MSH2 and MSH3.

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

hMutSbeta, a heterodimer of hMSH2 and hMSH3, binds to insertion/deletion loops in DNA

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

The human mutator gene homolog MSH2 and its association with hereditary nonpolyposis colon cancer

14 June 2018

1 reference

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MLH1, PMS1, and MSH2 interactions during the initiation of DNA mismatch repair in yeast

14 June 2018

1 reference

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Crystal structure of the eukaryotic DNA polymerase processivity factor PCNA

14 June 2018

1 reference

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The Saccharomyces cerevisiae Msh2 protein specifically binds to duplex oligonucleotides containing mismatched DNA base pairs and insertions

14 June 2018

1 reference

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The molecular basis of Turcot's syndrome

14 June 2018

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Mutator gene studies in Escherichia coli: the mutS gene.

14 June 2018

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Escherichia coli mutS-encoded protein binds to mismatched DNA base pairs

14 June 2018

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Nucleotide sequence of the Streptococcus pneumoniae hexB mismatch repair gene: homology of HexB to MutL of Salmonella typhimurium and to PMS1 of Saccharomyces cerevisiae

14 June 2018

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DNA mismatch correction in a defined system

14 June 2018

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Mechanism of the sliding beta-clamp of DNA polymerase III holoenzyme

14 June 2018

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Genetic structure and domains of DNA polymerase III of Bacillus subtilis

14 June 2018

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Three-dimensional structure of the beta subunit of E. coli DNA polymerase III holoenzyme: a sliding DNA clamp

14 June 2018

1 reference

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Spatio-temporal organization of replication in bacteria and eukaryotes (nucleoids and nuclei).

14 June 2018

1 reference

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Involvement of mismatch repair in the reciprocal control of motility and adherence of uropathogenic Escherichia coli

16 June 2018

1 reference

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Visualization of eukaryotic DNA mismatch repair reveals distinct recognition and repair intermediates.

16 June 2018

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Imaging mismatch repair and cellular responses to DNA damage in Bacillus subtilis.

16 June 2018

1 reference

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The role of mutators in the emergence of antibiotic-resistant bacteria

16 June 2018

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Bacillus subtilis mutS mutL operon: identification, nucleotide sequence and mutagenesis

16 June 2018

1 reference

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Functional analysis of the interaction between the mismatch repair protein MutS and the replication processivity factor β clamp in Pseudomonas aeruginosa.

16 June 2018

1 reference

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Mismatch repair, but not heteroduplex rejection, is temporally coupled to DNA replication

15 August 2018

1 reference

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The replicase sliding clamp dynamically accumulates behind progressing replication forks in Bacillus subtilis cells.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

Recruitment of condensin to replication origin regions by ParB/SpoOJ promotes chromosome segregation in B. subtilis

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

Spatial and temporal organization of the Bacillus subtilis replication cycle.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

Endonucleolytic function of MutLalpha in human mismatch repair.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

The beta sliding clamp binds to multiple sites within MutL and MutS.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

The midcell replication factory in Bacillus subtilis is highly mobile: implications for coordinating chromosome replication with other cell cycle events

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

Hypermutable Haemophilus influenzae with mutations in mutS are found in cystic fibrosis sputum

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

Control of DNA replication initiation by recruitment of an essential initiation protein to the membrane of Bacillus subtilis

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

High Rate of Macrolide Resistance inStaphylococcus aureusStrains from Patients with Cystic Fibrosis Reveals High Proportions of Hypermutable Strains

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

The DnaAcos allele of Escherichia coli: hyperactive initiation is caused by substitution of A184V and Y271H, resulting in defective ATP binding and aberrant DNA replication control

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

Transfer of the MSH2.MSH6 complex from proliferating cell nuclear antigen to mispaired bases in DNA.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

Visualization of mismatch repair in bacterial cells

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

Photocross-linking of the NH2-terminal region of Taq MutS protein to the major groove of a heteroduplex DNA.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

Base selection, proofreading, and mismatch repair during DNA replication in Escherichia coli.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5938748

Chromosome arrangement within a bacterium

15 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1111%2FMMI.12115

Bipolar Localization of the Replication Origin Regions of Chromosomes in Vegetative and Sporulating Cells of B. subtilis

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1111%2FMMI.12115

Two types of replication proteins increase the rate at which T4 DNA polymerase traverses the helical regions in a single-stranded DNA template

21 January 2018

1 reference

12 December 2020

Analysis of interactions between mismatch repair initiation factors and the replication processivity factor PCNA

1 reference

12 December 2020

Interaction of Escherichia coli MutS and MutL at a DNA mismatch

1 reference

12 December 2020

DNA replication fidelity

1 reference

12 December 2020

Functional analysis of MLH1 mutations linked to hereditary nonpolyposis colon cancer

1 reference

12 December 2020

Identifiers

DOI

10.1111/MMI.12115

1 reference

13 June 2018

PMCID

5938748

1 reference

13 June 2018

PubMed ID

23228104

1 reference

13 June 2018