Lignin-degrading peroxidases in Polyporales: an evolutionary survey based on 10 sequenced genomes (Q46040940)

18 December 2017

title

Lignin-degrading peroxidases in Polyporales: an evolutionary survey based on 10 sequenced genomes (English)

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18 December 2017

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Francisco J Ruiz-Dueñas

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18 December 2017

Angel T. Martínez

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18 December 2017

Taina Lundell

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Taina Lundell

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David Hibbett

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David S Hibbett

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18 December 2017

author name string

Dimitrios Floudas

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18 December 2017

Laszlo G Nagy

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José M Barrasa

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18 December 2017

publication date

6 August 2013

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18 December 2017

published in

Mycologia

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18 December 2017

volume

105

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18 December 2017

issue

6

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18 December 2017

page(s)

1428-1444

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18 December 2017

Basic local alignment search tool

cites work

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The phylogenetic distribution of resupinate forms across the major clades of mushroom‐forming fungi (Homobasidiomycetes)

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Phylogenetic and phylogenomic overview of the Polyporales

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Crystal structures of pristine and oxidatively processed lignin peroxidase expressed in Escherichia coli and of the W171F variant that eliminates the redox active tryptophan 171. Implications for the reaction mechanism

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Protein structure homology modeling using SWISS-MODEL workspace.

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BEAST: Bayesian evolutionary analysis by sampling trees

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A hybrid micro-macroevolutionary approach to gene tree reconstruction.

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Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis

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Lignin-degrading peroxidases from genome of selective ligninolytic fungus Ceriporiopsis subvermispora.

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The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

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Purification and characterization of an extracellular Mn(II)-dependent peroxidase from the lignin-degrading basidiomycete, Phanerochaete chrysosporium

21 January 2018

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An extracellular H2O2-requiring enzyme preparation involved in lignin biodegradation by the white rot basidiomycete Phanerochaete chrysosporium

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Induction of extracellular hydroxyl radical production by white-rot fungi through quinone redox cycling

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The genome portal of the Department of Energy Joint Genome Institute

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High-yield production of aromatic peroxygenase by the agaric fungus Marasmius rotula

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A study on reducing substrates of manganese-oxidizing peroxidases from Pleurotus eryngii and Bjerkandera adusta.

21 January 2018

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Analysis of character correlations among wood decay mechanisms, mating systems, and substrate ranges in homobasidiomycetes

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The two manganese peroxidases Pr-MnP2 and Pr-MnP3 of Phlebia radiata, a lignin-degrading basidiomycete, are phylogenetically and structurally divergent.

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Heme-thiolate haloperoxidases: versatile biocatalysts with biotechnological and environmental significance

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New and classic families of secreted fungal heme peroxidases.

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Mn-dependent peroxidase from the lignin-degrading white rot fungus Phlebia radiata

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Recent developments in the MAFFT multiple sequence alignment program

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Extracellular oxidative systems of the lignin-degrading Basidiomycete Phanerochaete chrysosporium

21 January 2018

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Heterologous expression of athermostable manganese peroxidase from Dichomitus squalens in Phanerochaete chrysosporium

21 January 2018

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DyP-like peroxidases of the jelly fungus Auricularia auricula-judae oxidize nonphenolic lignin model compounds and high-redox potential dyes.

21 January 2018

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Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis

21 January 2018

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Lignin-modifying enzymes in filamentous basidiomycetes--ecological, functional and phylogenetic review

21 January 2018

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Enzymatic delignification of plant cell wall: from nature to mill

21 January 2018

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Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion

21 January 2018

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Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78

21 January 2018

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Purification and catalytic properties of two manganese peroxidase isoenzymes from Pleurotus eryngii

21 January 2018

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Characterization of a novel manganese peroxidase-lignin peroxidase hybrid isozyme produced by Bjerkandera species strain BOS55 in the absence of manganese

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Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche

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Ligninolytic enzymes of the white-rot fungus Phlebia radiata

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Bayesian estimation of ancestral character states on phylogenies

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Versatile peroxidase oxidation of high redox potential aromatic compounds: site-directed mutagenesis, spectroscopic and crystallographic investigation of three long-range electron transfer pathways.

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Selective hydroxylation of alkanes by an extracellular fungal peroxygenase

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The path forward for biofuels and biomaterials

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Pleurotus ostreatus heme peroxidases: an in silico analysis from the genome sequence to the enzyme molecular structure.

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Substrate oxidation sites in versatile peroxidase and other basidiomycete peroxidases.

21 January 2018

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Novel peroxidases of Marasmius scorodonius degrade beta-carotene

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Fungal degradation of recalcitrant nonphenolic lignin structures without lignin peroxidase

21 January 2018

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A rapid bootstrap algorithm for the RAxML Web servers

21 January 2018

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DyP-type peroxidases comprise a novel heme peroxidase family

21 January 2018

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MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

21 January 2018

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Lignin-Degrading Enzyme from the Hymenomycete Phanerochaete chrysosporium Burds

21 January 2018

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The haloperoxidase of the agaric fungus Agrocybe aegerita hydroxylates toluene and naphthalene

21 January 2018

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Novel haloperoxidase from the agaric basidiomycete Agrocybe aegerita oxidizes aryl alcohols and aldehydes

21 January 2018

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Reconciliation with non-binary species trees.

21 January 2018

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The catalytic mechanism of dye-decolorizing peroxidase DyP may require the swinging movement of an aspartic acid residue

21 January 2018

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Identification and structural characterization of heme binding in a novel dye-decolorizing peroxidase, TyrA

21 January 2018

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Identification of a new member of the dye-decolorizing peroxidase family from Pleurotus ostreatus

21 January 2018

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A unique dye-decolorizing peroxidase, DyP, from Thanatephorus cucumeris Dec 1: heterologous expression, crystallization and preliminary X-ray analysis

21 January 2018

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21 January 2018

Identifiers

DOI

10.3852/13-059

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18 December 2017

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18 December 2017