Effects of oxidation, pH and lipids on amyloidogenic peptide structure: implications for fibril formation? (Q46390730)

21 December 2017

title

Effects of oxidation, pH and lipids on amyloidogenic peptide structure: implications for fibril formation? (English)

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21 December 2017

author

Irene Yarovsky

4

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21 December 2017

author name string

Andrew Hung

1

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21 December 2017

Michael D W Griffin

2

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21 December 2017

Geoffrey J Howlett

3

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21 December 2017

publication date

4 September 2008

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21 December 2017

European Biophysics Journal

published in

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21 December 2017

volume

38

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21 December 2017

issue

1

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21 December 2017

page(s)

99-110

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21 December 2017

The structural basis for amyloid formation by plasma apolipoproteins: a review

cites work

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Crossref

https://api.crossref.org/works/10.1007%2FS00249-008-0363-3

GROMACS 3.0: a package for molecular simulation and trajectory analysis

21 January 2018

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Crossref

https://api.crossref.org/works/10.1007%2FS00249-008-0363-3

Structure of the 21-30 fragment of amyloid beta-protein.

21 January 2018

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12 December 2020

Oxidation of methionine 35 attenuates formation of amyloid beta -peptide 1-40 oligomers

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12 December 2020

Molecular dynamics simulation of the aggregation of the core-recognition motif of the islet amyloid polypeptide in explicit water

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12 December 2020

The structure of the Alzheimer amyloid beta 10-35 peptide probed through replica-exchange molecular dynamics simulations in explicit solvent.

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12 December 2020

Helix H1 of the prion protein is rather stable against environmental perturbations: molecular dynamics of mutation and deletion variants of PrP(90-231).

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12 December 2020

Macromolecular crowding accelerates amyloid formation by human apolipoprotein C-II.

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12 December 2020

The structure and interactions of human apolipoprotein C-II in dodecyl phosphocholine

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12 December 2020

Methionine 35 oxidation reduces fibril assembly of the amyloid abeta-(1-42) peptide of Alzheimer's disease

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12 December 2020

Stabilities and conformations of Alzheimer's beta -amyloid peptide oligomers (Abeta 16-22, Abeta 16-35, and Abeta 10-35): Sequence effects

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12 December 2020

Misfolding of the amyloid β-protein: A molecular dynamics study

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12 December 2020

Conformational diversity of the fibrillogenic fusion peptide B18 in different environments from molecular dynamics simulations.

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12 December 2020

Molecular dynamics study to investigate the effect of chemical substitutions of methionine 35 on the secondary structure of the amyloid beta (Abeta(1-42)) monomer in aqueous solution

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12 December 2020

Self-assembled peptide nanostructures: the design of molecular building blocks and their technological utilization

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12 December 2020

The alpha-to-beta conformational transition of Alzheimer's Abeta-(1-42) peptide in aqueous media is reversible: a step by step conformational analysis suggests the location of beta conformation seeding

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12 December 2020

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

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12 December 2020

NMR structure of human apolipoprotein C-II in the presence of sodium dodecyl sulfate

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12 December 2020

Dynamics of Asp23-Lys28 salt-bridge formation in Abeta10-35 monomers

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12 December 2020

Human apolipoprotein C-II forms twisted amyloid ribbons and closed loops

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12 December 2020

Molecular dynamics simulations of a fluid bilayer of dipalmitoylphosphatidylcholine at full hydration, constant pressure, and constant temperature

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12 December 2020

Folding landscapes of the Alzheimer amyloid-beta(12-28) peptide.

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12 December 2020

Conformational mapping of the N-terminal peptide of HIV-1 gp41 in lipid detergent and aqueous environments using 13C-enhanced Fourier transform infrared spectroscopy

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12 December 2020

Aggregation of small peptides studied by molecular dynamics simulations

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12 December 2020

Molecular dynamics simulations of a fibrillogenic peptide derived from apolipoprotein C-II

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12 December 2020

Phospholipid interaction induces molecular-level polymorphism in apolipoprotein C-II amyloid fibrils via alternative assembly pathways.

1 reference

12 December 2020

A proposed structural model for amyloid fibril elongation: domain swapping forms an interdigitating beta-structure polymer

1 reference

12 December 2020

Folding of the 25 residue Abeta(12-36) peptide in TFE/water: temperature-dependent transition from a funneled free-energy landscape to a rugged one.

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12 December 2020

Global structure and dynamics of human apolipoprotein CII in complex with micelles: evidence for increased mobility of the helix involved in the activation of lipoprotein lipase

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12 December 2020

The role of Phe in the formation of well-ordered oligomers of amyloidogenic hexapeptide (NFGAIL) observed in molecular dynamics simulations with explicit solvent

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12 December 2020

Sub-micellar phospholipid accelerates amyloid formation by apolipoprotein C-II.

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12 December 2020

VMD: visual molecular dynamics

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12 December 2020

Structural diversity of amyloid fibril formed in human calcitonin as revealed by site-directed 13C solid-state NMR spectroscopy

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12 December 2020

Molecular basis for amyloid fibril formation and stability

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12 December 2020

Oxidation reduces the fibrillation but not the neurotoxicity of the prion peptide PrP106-126

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12 December 2020

GROMACS: fast, flexible, and free

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12 December 2020

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12 December 2020

Effects of solvent on the structure of the Alzheimer amyloid-beta(25-35) peptide

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12 December 2020

Structures of a peptide fragment of beta2-microglobulin studied by replica-exchange molecular dynamics simulations - towards the understanding of the mechanism of amyloid formation.

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12 December 2020

Structure of core domain of fibril-forming PHF/Tau fragments.

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12 December 2020

Molecular dynamics studies of hexamers of amyloid-beta peptide (16-35) and its mutants: influence of charge states on amyloid formation.

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12 December 2020

Serpin acceleration of amyloid fibril formation: a role for accessory proteins

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12 December 2020

Amyloid formation may involve alpha- to beta sheet interconversion via peptide plane flipping

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12 December 2020

Serum amyloid P colocalizes with apolipoproteins in human atheroma: functional implications

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12 December 2020

The aggregation and fibrillation of alpha-synuclein

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12 December 2020

pK values of the ionizable groups of proteins

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12 December 2020

Oxidation inhibits amyloid fibril formation of transthyretin.

1 reference

12 December 2020

Beta-hairpin conformation of fibrillogenic peptides: structure and alpha-beta transition mechanism revealed by molecular dynamics simulations

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12 December 2020

Thermodynamic and kinetic characterization of a beta-hairpin peptide in solution: an extended phase space sampling by molecular dynamics simulations in explicit water.

1 reference

12 December 2020

Recent atomic models of amyloid fibril structure

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12 December 2020

Regulated expression of the apolipoprotein E/C-I/C-IV/C-II gene cluster in murine and human macrophages. A critical role for nuclear liver X receptors alpha and beta

1 reference

12 December 2020

A Structural Core Within Apolipoprotein C-II Amyloid Fibrils Identified Using Hydrogen Exchange and Proteolysis

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12 December 2020

Exploring atomistic details of pH-dependent peptide folding

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12 December 2020

10.1007/S00249-008-0363-3

Identifiers

DOI

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21 December 2017

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21 December 2017