Quantitative statistical analysis of cis-regulatory sequences in ABA/VP1- and CBF/DREB1-regulated genes of Arabidopsis (Q46661343)

24 December 2017

title

Quantitative statistical analysis of cis-regulatory sequences in ABA/VP1- and CBF/DREB1-regulated genes of Arabidopsis (English)

1 reference

24 December 2017

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Masaharu Suzuki

1

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24 December 2017

Matthew G Ketterling

series ordinal

2

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24 December 2017

Donald R McCarty

series ordinal

3

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24 December 2017

language of work or name

English

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publication date

19 August 2005

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24 December 2017

published in

Plant Physiology

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24 December 2017

volume

139

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24 December 2017

issue

1

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24 December 2017

page(s)

437-447

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24 December 2017

A WRKY gene from creosote bush encodes an activator of the abscisic acid signaling pathway

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HvDRF1 is involved in abscisic acid-mediated gene regulation in barley and produces two forms of AP2 transcriptional activators, interacting preferably with a CT-rich element

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Integration of wounding and osmotic stress signals determines the expression of the AtMYB102 transcription factor gene

29 September 2018

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Synergistic activation of seed storage protein gene expression in Arabidopsis by ABI3 and two bZIPs related to OPAQUE2.

29 September 2018

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An EREBP/AP2-type protein in Triticum aestivum was a DRE-binding transcription factor induced by cold, dehydration and ABA stress

29 September 2018

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29 September 2018

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Module-specific regulation of the beta-phaseolin promoter during embryogenesis

29 September 2018

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AFP is a novel negative regulator of ABA signaling that promotes ABI5 protein degradation

29 September 2018

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The transcription factors HvABI5 and HvVP1 are required for the abscisic acid induction of gene expression in barley aleurone cells

29 September 2018

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Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signaling

29 September 2018

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Arabidopsis ABI5 subfamily members have distinct DNA-binding and transcriptional activities

29 September 2018

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Transcription factor CBF4 is a regulator of drought adaptation in Arabidopsis

29 September 2018

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Maize ABI4 binds coupling element1 in abscisic acid and sugar response genes

29 September 2018

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Regulation and role of the Arabidopsis abscisic acid-insensitive 5 gene in abscisic acid, sugar, and stress response

29 September 2018

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A screen for genes that function in abscisic acid signaling in Arabidopsis thaliana.

29 September 2018

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An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments

29 September 2018

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The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis.

29 September 2018

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Homeodomain protein ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis

29 September 2018

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Maize DRE-binding proteins DBF1 and DBF2 are involved in rab17 regulation through the drought-responsive element in an ABA-dependent pathway

29 September 2018

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Cell signaling during cold, drought, and salt stress.

29 September 2018

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Abscisic acid signaling in seeds and seedlings.

29 September 2018

1 reference

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A Gibbs sampling method to detect overrepresented motifs in the upstream regions of coexpressed genes.

29 September 2018

1 reference

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Regulation of Arabidopsis thaliana Em genes: role of ABI5.

29 September 2018

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Functional annotation of a full-length Arabidopsis cDNA collection

29 September 2018

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Arabidopsis basic leucine zipper proteins that mediate stress-responsive abscisic acid signaling

29 September 2018

1 reference

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Experimentally determined sequence requirement of ACGT-containing abscisic acid response element

29 September 2018

1 reference

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ABI5 interacts with abscisic acid signaling effectors in rice protoplasts

29 September 2018

1 reference

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PROSPECT improves cis-acting regulatory element prediction by integrating expression profile data with consensus pattern searches.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1203392

Physical interactions between ABA response loci of Arabidopsis.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1203392

Chromatin structure and phaseolin gene regulation.

29 September 2018

1 reference

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Protein binding to the abscisic acid-responsive element is independent of VIVIPAROUS1 in vivo.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1203392

A postgermination developmental arrest checkpoint is mediated by abscisic acid and requires the ABI5 transcription factor in Arabidopsis

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1203392

BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1203392

A novel cold-inducible zinc finger protein from soybean, SCOF-1, enhances cold tolerance in transgenic plants

29 September 2018

1 reference

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Regulatory element detection using correlation with expression.

29 September 2018

1 reference

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So what's new in the field of plant cold acclimation? Lots!

29 September 2018

1 reference

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Regulation and function of the Arabidopsis ABA-insensitive4 gene in seed and abscisic acid response signaling networks

29 September 2018

1 reference

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Transactivation of the Brassica napus napin promoter by ABI3 requires interaction of the conserved B2 and B3 domains of ABI3 with different cis-elements: B2 mediates activation through an ABRE, whereas B3 interacts with an RY/G-box

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1203392

Arabidopsis basic leucine zipper transcription factors involved in an abscisic acid-dependent signal transduction pathway under drought and high-salinity conditions.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1203392

The Arabidopsis abscisic acid response gene ABI5 encodes a basic leucine zipper transcription factor

29 September 2018

1 reference

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Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae

29 September 2018

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ABFs, a family of ABA-responsive element binding factors

29 September 2018

1 reference

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The HD-Zip gene ATHB6 in Arabidopsis is expressed in developing leaves, roots and carpels and up-regulated by water deficit conditions

29 September 2018

1 reference

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Interaction between composite elements in the napA promoter: both the B-box ABA-responsive complex and the RY/G complex are necessary for seed-specific expression.

29 September 2018

1 reference

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Candidate regulatory sequence elements for cell cycle-dependent transcription in Saccharomyces cerevisiae

29 September 2018

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beta-Phaseolin gene activation is a two-step process: PvALF- facilitated chromatin modification followed by abscisic acid-mediated gene activation

29 September 2018

1 reference

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Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought- and low-temperature-responsive gene expression, respectively, in Arabidopsis.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1203392

The Arabidopsis abscisic acid response locus ABI4 encodes an APETALA 2 domain protein.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1203392

A new homeodomain-leucine zipper gene from Arabidopsis thaliana induced by water stress and abscisic acid treatment

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1203392

The quiescent/colorless alleles of viviparous1 show that the conserved B3 domain of VP1 is not essential for ABA-regulated gene expression in the seed

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1203392

The conserved B3 domain of VIVIPAROUS1 has a cooperative DNA binding activity

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1203392

Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit

29 September 2018

1 reference

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Conserved RY-repeats mediate transactivation of seed-specific promoters by the developmental regulator PvALF.

29 September 2018

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The Arabidopsis homeobox gene ATHB-7 is induced by water deficit and by abscisic acid

29 September 2018

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Localization and interaction of the cis-acting elements for abscisic acid, VIVIPAROUS1, and light activation of the C1 gene of maize.

29 September 2018

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Plant bZIP protein DNA binding specificity

29 September 2018

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An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence.

29 September 2018

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The 5'-region of Arabidopsis thaliana cor15a has cis-acting elements that confer cold-, drought- and ABA-regulated gene expression

29 September 2018

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A novel cis-acting element in an Arabidopsis gene is involved in responsiveness to drought, low-temperature, or high-salt stress

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1203392

Plant bZIP proteins gather at ACGT elements

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1203392

Isolation of two soybean G‐box binding factors which interact with a G‐box sequence of an auxin‐responsive gene

29 September 2018

1 reference

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29 September 2018

Abscisic acid signaling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1203392

Regulation of the Osem gene by abscisic acid and the transcriptional activator VP1: analysis of cis‐acting promoter elements required for regulation by abscisic acid and VP1

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1203392

Integrated control of seed maturation and germination programs by activator and repressor functions of Viviparous-1 of maize

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1203392

The Viviparous-1 developmental gene of maize encodes a novel transcriptional activator

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1203392

DNA binding site preferences and transcriptional activation properties of the Arabidopsis transcription factor GBF1

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1203392

The Viviparous-1 gene and abscisic acid activate the C1 regulatory gene for anthocyanin biosynthesis during seed maturation in maize

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1203392

The legumin boxes and the 3' part of a soybean beta-conglycinin promoter are involved in seed gene expression in transgenic tobacco plants

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1203392

Heterodimerization between light-regulated and ubiquitously expressed Arabidopsis GBF bZIP proteins

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1203392

Isolation of the Arabidopsis ABI3 gene by positional cloning

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1203392

Cis-analysis of a seed protein gene promoter: the conservative RY repeat CATGCATG within the legumin box is essential for tissue-specific expression of a legumin gene

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1203392

Cold Induction of Arabidopsis CBF Genes Involves Multiple ICE (Inducer of CBF Expression) Promoter Elements and a Cold-Regulatory Circuit That Is Desensitized by Low Temperature

29 September 2018

1 reference

12 December 2020

Overlap of Viviparous1 (VP1) and abscisic acid response elements in the Em promoter: G-box elements are sufficient but not necessary for VP1 transactivation

1 reference

12 December 2020

Identification and analysis of eukaryotic promoters: recent computational approaches

1 reference

12 December 2020

ACGT-containing abscisic acid response element (ABRE) and coupling element 3 (CE3) are functionally equivalent

1 reference

12 December 2020

Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway

1 reference

12 December 2020

Tissue-specific and temporal regulation of a beta-conglycinin gene: roles of the RY repeat and other cis-acting elements

1 reference

12 December 2020

The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28

1 reference

12 December 2020

Modular nature of abscisic acid (ABA) response complexes: composite promoter units that are necessary and sufficient for ABA induction of gene expression in barley

1 reference

12 December 2020

Identifiers

DOI

10.1104/PP.104.058412

1 reference

24 December 2017

PMC publication ID

1203392

0 references

1 reference

24 December 2017