Arabidopsis defense against Botrytis cinerea: chronology and regulation deciphered by high-resolution temporal transcriptomic analysis (Q46719725)

24 December 2017

title

Arabidopsis defense against Botrytis cinerea: chronology and regulation deciphered by high-resolution temporal transcriptomic analysis (English)

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24 December 2017

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Botrytis cinerea

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11

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24 December 2017

Johanna Rhodes

12

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24 December 2017

Daniel J. Kliebenstein

14

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24 December 2017

Oliver Stegle

16

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24 December 2017

Jonathan D. Moore

21

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24 December 2017

Andrew Mead

24

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24 December 2017

Katherine J Denby

29

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24 December 2017

David A Rand

object named as

David Rand

25

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Karsten Borgwardt

17

object named as

Karsten Borgwardt

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24 December 2017

Oliver Windram

1

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24 December 2017

Priyadharshini Madhou

2

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24 December 2017

Stuart McHattie

3

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24 December 2017

Claire Hill

4

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24 December 2017

Richard Hickman

5

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24 December 2017

Emma Cooke

6

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24 December 2017

Dafyd J Jenkins

7

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24 December 2017

Christopher A Penfold

8

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24 December 2017

Laura Baxter

9

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24 December 2017

Emily Breeze

10

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24 December 2017

Susanna Atwell

13

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24 December 2017

Youn-Sung Kim

15

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24 December 2017

Cunjin Zhang

18

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24 December 2017

Alex Tabrett

19

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24 December 2017

Roxane Legaie

20

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24 December 2017

Bärbel Finkenstadt

22

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24 December 2017

David L Wild

23

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24 December 2017

Jim Beynon

26

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24 December 2017

Sascha Ott

27

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24 December 2017

Vicky Buchanan-Wollaston

28

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24 December 2017

publication date

28 September 2012

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24 December 2017

published in

The Plant Cell

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24 December 2017

volume

24

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24 December 2017

issue

9

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24 December 2017

page(s)

3530-3557

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24 December 2017

Creative Commons Attribution 4.0 International

copyright license

start time

20 January 2021

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April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

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26 August 2018

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26 August 2018

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26 August 2018

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26 August 2018

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A battery of transcription factors involved in the regulation of secondary cell wall biosynthesis in Arabidopsis.

26 August 2018

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An Elicitor from Botrytis cinerea Induces the Hypersensitive Response in Arabidopsis thaliana and Other Plants and Promotes the Gray Mold Disease

26 August 2018

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Control of jasmonate biosynthesis and senescence by miR319 targets

26 August 2018

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Posttranslational regulation of NF-YA modulates NF-Y transcriptional activity.

26 August 2018

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Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development.

26 August 2018

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26 August 2018

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26 August 2018

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26 August 2018

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26 August 2018

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26 August 2018

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26 August 2018

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26 August 2018

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A systems biology approach identifies a R2R3 MYB gene subfamily with distinct and overlapping functions in regulation of aliphatic glucosinolates

26 August 2018

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26 August 2018

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Networks of WRKY transcription factors in defense signaling.

26 August 2018

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MYC2 differentially modulates diverse jasmonate-dependent functions in Arabidopsis.

26 August 2018

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26 August 2018

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Resistance to Botrytis cinerea induced in Arabidopsis by elicitors is independent of salicylic acid, ethylene, or jasmonate signaling but requires PHYTOALEXIN DEFICIENT3.

26 August 2018

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Arabidopsis WRKY70 is required for full RPP4-mediated disease resistance and basal defense against Hyaloperonospora parasitica

26 August 2018

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Overexpression of pectin methylesterase inhibitors in Arabidopsis restricts fungal infection by Botrytis cinerea

26 August 2018

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Overexpression of TMAC2, a novel negative regulator of abscisic acid and salinity responses, has pleiotropic effects in Arabidopsis thaliana.

26 August 2018

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CONSTANS and the CCAAT box binding complex share a functionally important domain and interact to regulate flowering of Arabidopsis.

26 August 2018

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26 August 2018

The plant immune system

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The MATE proteins as fundamental transporters of metabolic and xenobiotic organic cations

26 August 2018

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Expression profiling and mutant analysis reveals complex regulatory networks involved in Arabidopsis response to Botrytis infection

26 August 2018

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Identification of an abscisic acid gene cluster in the grey mold Botrytis cinerea

26 August 2018

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An endogenous peptide signal in Arabidopsis activates components of the innate immune response

26 August 2018

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Crosstalk between abiotic and biotic stress responses: a current view from the points of convergence in the stress signaling networks

26 August 2018

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DOF transcription factor AtDof1.1 (OBP2) is part of a regulatory network controlling glucosinolate biosynthesis in Arabidopsis

26 August 2018

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Genome-wide analysis of the ERF gene family in Arabidopsis and rice

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

Bayesian coclustering of Anopheles gene expression time series: study of immune defense response to multiple experimental challenges.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

Photosystem II core phosphorylation and photosynthetic acclimation require two different protein kinases

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

ABR1, an APETALA2-domain transcription factor that functions as a repressor of ABA response in Arabidopsis

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

Secondary metabolites influence Arabidopsis/Botrytis interactions: variation in host production and pathogen sensitivity

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

Arabidopsis TCP20 links regulation of growth and cell division control pathways

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

The transcription factor ATAF2 represses the expression of pathogenesis-related genes in Arabidopsis.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

The use of abscisic acid analogues to analyse the substrate selectivity of UGT71B6, a UDP-glycosyltransferase of Arabidopsis thaliana

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

Arabidopsis ERF4 is a transcriptional repressor capable of modulating ethylene and abscisic acid responses

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

A Link between ethylene and auxin uncovered by the characterization of two root-specific ethylene-insensitive mutants in Arabidopsis

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

Positive and negative factors confer phase-specific circadian regulation of transcription in Arabidopsis

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

BRL1 and BRL3 are novel brassinosteroid receptors that function in vascular differentiation in Arabidopsis

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

Unique and overlapping expression patterns among the Arabidopsis 1-amino-cyclopropane-1-carboxylate synthase gene family members

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

Phytochrome-interacting factor 1 is a critical bHLH regulator of chlorophyll biosynthesis.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

limmaGUI: a graphical user interface for linear modeling of microarray data

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

Regulation of disease resistance pathways by AP2/ERF transcription factors.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

A proteoglycan mediates inductive interaction during plant vascular development.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

Dof domain proteins: plant-specific transcription factors associated with diverse phenomena unique to plants

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

Identification of Botrytis cinerea susceptibility loci in Arabidopsis thaliana

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

Arabidopsis CYP707As encode (+)-abscisic acid 8'-hydroxylase, a key enzyme in the oxidative catabolism of abscisic acid

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

PCC1: a merging point for pathogen defence and circadian signalling in Arabidopsis

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

Knockout analysis of Arabidopsis transcription factors TGA2, TGA5, and TGA6 reveals their redundant and essential roles in systemic acquired resistance

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

The BOTRYTIS SUSCEPTIBLE1 gene encodes an R2R3MYB transcription factor protein that is required for biotic and abiotic stress responses in Arabidopsis

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

Salicylic acid and NPR1 induce the recruitment of trans-activating TGA factors to a defense gene promoter in Arabidopsis

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

Arabidopsis local resistance to Botrytis cinerea involves salicylic acid and camalexin and requires EDS4 and PAD2, but not SID2, EDS5 or PAD4.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

MATCH: A tool for searching transcription factor binding sites in DNA sequences

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

Arabidopsis LEAFY COTYLEDON1 represents a functionally specialized subunit of the CCAAT binding transcription factor

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signaling

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

BAK1, an Arabidopsis LRR receptor-like protein kinase, interacts with BRI1 and modulates brassinosteroid signaling

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

The Arabidopsis mutant cev1 links cell wall signaling to jasmonate and ethylene responses

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

Constitutive expression of ETHYLENE-RESPONSE-FACTOR1 in Arabidopsis confers resistance to several necrotrophic fungi.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

PIF4, a phytochrome-interacting bHLH factor, functions as a negative regulator of phytochrome B signaling in Arabidopsis.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

Infection of Arabidopsis with a necrotrophic pathogen, Botrytis cinerea, elicits various defense responses but does not induce systemic acquired resistance (SAR).

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

Abscisic acid determines basal susceptibility of tomato to Botrytis cinerea and suppresses salicylic acid-dependent signaling mechanisms

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

EDS5, an essential component of salicylic acid-dependent signaling for disease resistance in Arabidopsis, is a member of the MATE transporter family

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

The R2R3-MYB gene family in Arabidopsis thaliana

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

beta-Aminobutyric acid-induced protection of Arabidopsis against the necrotrophic fungus Botrytis cinerea

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

Orchestrated transcription of key pathways in Arabidopsis by the circadian clock

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

Gene ontology: tool for the unification of biology

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

Separate jasmonate-dependent and salicylate-dependent defense-response pathways in Arabidopsis are essential for resistance to distinct microbial pathogens

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

The G-box: a ubiquitous regulatory DNA element in plants bound by the GBF family of bZIP proteins

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

Mutation of either G box or I box sequences profoundly affects expression from the Arabidopsis rbcS-1A promoter

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

ADS1 encodes a MATE-transporter that negatively regulates plant disease resistance

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3480286

A critical role of autophagy in plant resistance to necrotrophic fungal pathogens

1 December 2018

1 reference

12 December 2020

The endopolygalacturonase 1 from Botrytis cinerea activates grapevine defense reactions unrelated to its enzymatic activity

1 reference

12 December 2020

A role for circadian evening elements in cold-regulated gene expression in Arabidopsis

1 reference

12 December 2020

Arabidopsis histidine kinase 5 regulates salt sensitivity and resistance against bacterial and fungal infection

1 reference

12 December 2020

Characterization of a new, nonpathogenic mutant of Botrytis cinerea with impaired plant colonization capacity

1 reference

12 December 2020

GUN4-porphyrin complexes bind the ChlH/GUN5 subunit of Mg-Chelatase and promote chlorophyll biosynthesis in Arabidopsis

1 reference

12 December 2020

Ethylene-responsive element-binding factor 5, ERF5, is involved in chitin-induced innate immunity response

1 reference

12 December 2020

The TCP4 transcription factor of Arabidopsis blocks cell division in yeast at G1→S transition

1 reference

12 December 2020

ABA is an essential signal for plant resistance to pathogens affecting JA biosynthesis and the activation of defenses in Arabidopsis

1 reference

12 December 2020

State transitions and light adaptation require chloroplast thylakoid protein kinase STN7

1 reference

12 December 2020

Plant immunity: it's the hormones talking, but what do they say?

1 reference

12 December 2020

Physical and functional interactions between pathogen-induced Arabidopsis WRKY18, WRKY40, and WRKY60 transcription factors

1 reference

12 December 2020

Requirement of functional ethylene-insensitive 2 gene for efficient resistance of Arabidopsis to infection by Botrytis cinerea

1 reference

12 December 2020

Arabidopsis WRKY33 is a key transcriptional regulator of hormonal and metabolic responses toward Botrytis cinerea infection

1 reference

12 December 2020

Arabidopsis RAP2.2 plays an important role in plant resistance to Botrytis cinerea and ethylene responses

1 reference

12 December 2020

Arabidopsis MPK3 and MPK6 play different roles in basal and oligogalacturonide- or flagellin-induced resistance against Botrytis cinerea

1 reference

12 December 2020

Genetic interactions of TGA transcription factors in the regulation of pathogenesis-related genes and disease resistance in Arabidopsis

1 reference

12 December 2020

AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks

1 reference

12 December 2020

WRKY70 modulates the selection of signaling pathways in plant defense

1 reference

12 December 2020

Identifiers

DOI

10.1105/TPC.112.102046

1 reference

24 December 2017

0 references

1 reference

24 December 2017