A comparative genomics analysis of codon reassignments reveals a link with mitochondrial proteome size and a mechanism of genetic code change via suppressor tRNAs (Q47295073)

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English	A comparative genomics analysis of codon reassignments reveals a link with mitochondrial proteome size and a mechanism of genetic code change via suppressor tRNAs	scientific article

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scholarly article

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Europe PubMed Central

13 January 2018

http://europepmc.org/abstract/MED/17390094

A comparative genomics analysis of codon reassignments reveals a link with mitochondrial proteome size and a mechanism of genetic code change via suppressor tRNAs (English)

1 reference

Europe PubMed Central

13 January 2018

http://europepmc.org/abstract/MED/17390094

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comparative genomics

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based on heuristic

inferred from title

2

1 reference

Europe PubMed Central

13 January 2018

http://europepmc.org/abstract/MED/17390094

author name string

Steven E Massey

1

1 reference

Europe PubMed Central

13 January 2018

http://europepmc.org/abstract/MED/17390094

publication date

27 March 2007

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Europe PubMed Central

13 January 2018

http://europepmc.org/abstract/MED/17390094

Journal of Molecular Evolution

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Europe PubMed Central

13 January 2018

http://europepmc.org/abstract/MED/17390094

64

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Europe PubMed Central

13 January 2018

http://europepmc.org/abstract/MED/17390094

4

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Europe PubMed Central

13 January 2018

http://europepmc.org/abstract/MED/17390094

399-410

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Europe PubMed Central

13 January 2018

http://europepmc.org/abstract/MED/17390094

https://scigraph.springernature.com/pub.10.1007/s00239-005-0260-7

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The chaperonin genes of jakobid and jakobid-like flagellates: implications for eukaryotic evolution.

1 reference

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21 January 2018

Evolutionary relationships among "jakobid" flagellates as indicated by alpha- and beta-tubulin phylogenies.

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https://api.crossref.org/works/10.1007%2FS00239-005-0260-7

21 January 2018

Widespread and ancient distribution of a noncanonical genetic code in diplomonads.

1 reference

https://api.crossref.org/works/10.1007%2FS00239-005-0260-7

21 January 2018

Glutamine is incorporated at the nonsense codons UAG and UAA in a suppressor-free Escherichia coli strain

1 reference

https://api.crossref.org/works/10.1007%2FS00239-005-0260-7

21 January 2018

Physiological levels of normal tRNA(CAGGln) can effect partial suppression of amber mutations in the yeast Saccharomyces cerevisiae.

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https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

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Characterisation of a non-canonical genetic code in the oxymonad Streblomastix strix

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https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

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Murine leukemia virus protease is encoded by the gag-pol gene and is synthesized through suppression of an amber termination codon

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https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

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A comparison of three fission yeast mitochondrial genomes

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https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

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Changes in mitochondrial genetic codes as phylogenetic characters: two examples from the flatworms

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https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

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Cysteine tRNAs of plant origin as novel UGA suppressors

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https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

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The hypotrichous ciliate Euplotes octocarinatus has only one type of tRNACys with GCA anticodon encoded on a single macronuclear DNA molecule

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12 December 2020

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Strong homology between the small subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase of two species of Acetabularia and the occurrence of unusual codon usage

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

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A kingdom-level phylogeny of eukaryotes based on combined protein data

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

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Identification of amino acids inserted during suppression of UAA and UGA termination codons at the gag-pol junction of Moloney murine leukemia virus

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

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Pseudouridine in the anticodon G psi A of plant cytoplasmic tRNA(Tyr) is required for UAG and UAA suppression in the TMV-specific context

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Directionally evolving genetic code: the UGA codon from stop to tryptophan in mitochondria.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

On error minimization in a sequential origin of the standard genetic code.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An extra tRNAGly(U*CU) found in ascidian mitochondria responsible for decoding non-universal codons AGA/AGG as glycine

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

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Complete sequence of the amphioxus (Branchiostoma lanceolatum) mitochondrial genome: relations to vertebrates

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

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Transfer RNA mutation and the malleability of the genetic code.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Three Tetrahymena tRNA(Gln) isoacceptors as tools for studying unorthodox codon recognition and codon context effects during protein synthesis in vitro

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

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inferred from PubMed ID database lookup

The genetic code and error transmission

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

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DNA sequence analysis of the complete mitochondrial genome of the green alga Scenedesmus obliquus: evidence for UAG being a leucine and UCA being a non-sense codon

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Tryptophan transfer RNA as the UGA suppressor

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Codon reassignment (codon capture) in evolution.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

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The Closest Unicellular Relatives of Animals

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

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Mitochondrial tRNAs in the lower fungus Spizellomyces punctatus: tRNA editing and UAG 'stop' codons recognized as leucine

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

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Evolution of the mitochondrial genetic code. III. Reassignment of CUN codons from leucine to threonine during evolution of yeast mitochondria

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Isolation of a rat mitochondrial release factor. Accommodation of the changed genetic code for termination.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Natural UAG suppressor glutamine tRNA is elevated in mouse cells infected with Moloney murine leukemia virus

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

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Mitochondrial DNA of Chlamydomonas reinhardtii: the gene for apocytochrome b and the complete functional map of the 15.8 kb DNA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

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Complete nucleotide sequence of the mitochondrial DNA from Kluyveromyces lactis

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effect of B. subtilis TRNA(Trp) on readthrough rate at an opal UGA codon

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

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UGA is read as tryptophan in Mycoplasma capricolum

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

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Unusual genetic codes and a novel gene structure for tRNA(AGYSer) in starfish mitochondrial DNA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

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Complete sequence of the mitochondrial DNA of the chlorophyte alga Prototheca wickerhamii. Gene content and genome organization

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A quantitative measure of error minimization in the genetic code

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A deviant mitochondrial genetic code in prymnesiophytes (yellow-algae): UGA codon for tryptophan.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

UAG is a sense codon in several chlorophycean mitochondria

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

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Evolutionary changes in the genetic code.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Partial suppression of an ochre mutation in Saccharomyces cerevisiae by multicopy plasmids containing a normal yeast tRNAGln gene

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Normal yeast tRNA(CAGGln) can suppress amber codons and is encoded by an essential gene.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phylogeny of Choanozoa, Apusozoa, and Other Protozoa and Early Eukaryote Megaevolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

On malleability in the genetic code

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genomic evolution drives the evolution of the translation system

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolution of mitochondrial genomes and the genetic code

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MEGA2: molecular evolutionary genetics analysis software

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The origin of the genetic code

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An extreme codon preference strategy: codon reassignment.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Complete sequence of the mitochondrial DNA of the red alga Porphyra purpurea. Cyanobacterial introns and shared ancestry of red and green algae

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Reductive evolution of resident genomes.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Planarian mitochondria II. The unique genetic code as deduced from cytochrome c oxidase subunit I gene sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The mitochondrial DNA of Allomyces macrogynus: the complete genomic sequence from an ancestral fungus

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Novel amber suppressor tRNAs of mammalian origin.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rabbit beta-globin is extended beyond its UGA stop codon by multiple suppressions and translational reading gaps.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Wheat cytoplasmic arginine tRNA isoacceptor with a U*CG anticodon is an efficient UGA suppressor in vitro

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The molecular basis of nuclear genetic code change in ciliates.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

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Recent evidence for evolution of the genetic code

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

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Phylogenetic analysis of diatom coxI genes and implications of a fluctuating GC content on mitochondrial genetic code evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The mitochondrial genome of the hemichordate Balanoglossus carnosus and the evolution of deuterostome mitochondria

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The leaky UGA termination codon of tobacco rattle virus RNA is suppressed by tobacco chloroplast and cytoplasmic tRNAs(Trp) with CmCA anticodon

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Complete sequence of the mitochondrial DNA of Chlamydomonas eugametos

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

First position wobble in codon-anticodon pairing: amber suppression by a yeast glutamine tRNA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

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Comparative evolutionary genomics unveils the molecular mechanism of reassignment of the CTG codon in Candida spp

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

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UGA can be decoded as tryptophan at low efficiency in Bacillus subtilis

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

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How Mitochondria Redefine the Code

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https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

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Identifiers

10.1007/S00239-005-0260-7

1 reference

Europe PubMed Central

13 January 2018

http://europepmc.org/abstract/MED/17390094

1 reference

Europe PubMed Central

13 January 2018

http://europepmc.org/abstract/MED/17390094

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