An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes (Q47614219)

From Wikidata

Jump to navigation Jump to search

scientific article

Language	Label	Description	Also known as
English	An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes	scientific article

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

4 February 2018

http://europepmc.org/abstract/MED/12589766

An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes (English)

1 reference

Europe PubMed Central

PubMed publication ID

4 February 2018

http://europepmc.org/abstract/MED/12589766

protein structure prediction

0 references

protein structure

0 references

3

1 reference

Europe PubMed Central

PubMed publication ID

4 February 2018

http://europepmc.org/abstract/MED/12589766

object named as

Tanja Kortemme

1

0 references

author name string

Alexandre V Morozov

2

1 reference

Europe PubMed Central

PubMed publication ID

4 February 2018

http://europepmc.org/abstract/MED/12589766

language of work or name

0 references

publication date

1 February 2003

1 reference

Europe PubMed Central

PubMed publication ID

4 February 2018

http://europepmc.org/abstract/MED/12589766

Journal of Molecular Biology

1 reference

Europe PubMed Central

PubMed publication ID

4 February 2018

http://europepmc.org/abstract/MED/12589766

326

1 reference

Europe PubMed Central

PubMed publication ID

4 February 2018

http://europepmc.org/abstract/MED/12589766

4

1 reference

Europe PubMed Central

PubMed publication ID

4 February 2018

http://europepmc.org/abstract/MED/12589766

1239-1259

1 reference

Europe PubMed Central

PubMed publication ID

4 February 2018

http://europepmc.org/abstract/MED/12589766

Hydrogen bonding in globular proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

The atomic structure of protein-protein recognition sites

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Do salt bridges stabilize proteins? A continuum electrostatic analysis.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Polar group burial contributes more to protein stability than nonpolar group burial

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Satisfying hydrogen bonding potential in proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Are buried salt bridges important for protein stability and conformational specificity?

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Free energy determinants of secondary structure formation: I. alpha-Helices

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Protein stabilization by removal of unsatisfied polar groups: computational approaches and experimental tests

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

A buried polar interaction imparts structural uniqueness in a designed heterodimeric coiled coil

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Free energy determinants of tertiary structure and the evaluation of protein models.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Directionality of Hydrogen Bonds to Sulfur and Oxygen

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Hydrogen bond stereochemistry in protein structure and function

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Hydrogen bonding in globular proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

An improved hydrogen bond potential: impact on medium resolution protein structures.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Simulation of activation free energies in molecular systems

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Hydrogen Bond Energetics: A Simulation and Statistical Analysis ofN-Methyl Acetamide (NMA), Water, and Human Lysozyme†

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

DREIDING: a generic force field for molecular simulations

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Automated design of the surface positions of protein helices

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Review: protein design--where we were, where we are, where we're going.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Designing potential energy functions for protein folding

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Ab initio protein folding.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Predictive docking of protein-protein and protein-DNA complexes.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Polar hydrogen positions in proteins: Empirical energy placement and neutron diffraction comparison

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Hydrogen bonding in high-resolution protein structures: a new method to assess NMR protein geometry

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Principles that govern the folding of protein chains

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Bayesian statistical analysis of protein side-chain rotamer preferences

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Kinetic studies of protein-protein interactions

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Electrostatic aspects of protein-protein interactions.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Crystal structure and functional analysis of the SurE protein identify a novel phosphatase family

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Rosetta in CASP4: progress in ab initio protein structure prediction

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Native protein sequences are close to optimal for their structures

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

A simple physical model for binding energy hot spots in protein-protein complexes

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Factors affecting the ability of energy functions to discriminate correct from incorrect folds

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Discrimination of near-native protein structures from misfolded models by empirical free energy functions

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Free energies of protein decoys provide insight into determinants of protein stability

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Protein-protein docking predictions for the CAPRI experiment

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Shape complementarity at protein/protein interfaces

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Protein docking along smooth association pathways

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Design, activity, and structure of a highly specific artificial endonuclease

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Visualizing and quantifying molecular goodness-of-fit: small-probe contact dots with explicit hydrogen atoms

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

A dataset of protein-protein interfaces generated with a sequence-order-independent comparison technique

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Effective energy function for proteins in solution

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

De novo protein design: fully automated sequence selection

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Hydroxyl hydrogen conformations in trypsin determined by the neutron diffraction solvent difference map method: relative importance of steric and electrostatic factors in defining hydrogen-bonding geometries

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

An improved protein decoy set for testing energy functions for protein structure prediction.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Evaluation of Models of Electrostatic Interactions in Proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

Energy parameters in polypeptides. V. Empirical hydrogen bond potential function based on molecular orbital calculations

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900021-4

7 January 2021

based on heuristic

inferred from DOI database lookup

Hydrogen-bond geometry in organic crystals

1 reference

https://opencitations.net/index/coci/api/v1/citations/10.1021/AR00105A004

5 March 2023

Identifiers

10.1016/S0022-2836(03)00021-4

1 reference

Europe PubMed Central

PubMed publication ID

4 February 2018

http://europepmc.org/abstract/MED/12589766

release_ar3xurspwrbldogxi7rvcqigna

1 reference

https://api.fatcat.wiki/v0/release/ar3xurspwrbldogxi7rvcqigna

24 November 2022

based on heuristic

mapped directly with Wikidata item

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

4 February 2018

http://europepmc.org/abstract/MED/12589766

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q47614219&oldid=2162454378"