The CATH Dictionary of Homologous Superfamilies (DHS): a consensus approach for identifying distant structural homologues (Q47621170)

4 February 2018

title

The CATH Dictionary of Homologous Superfamilies (DHS): a consensus approach for identifying distant structural homologues (English)

1 reference

4 February 2018

author

Janet Thornton

series ordinal

4

1 reference

4 February 2018

Frances M. G. Pearl

series ordinal

3

object named as

Pearl FM

1 reference

4 February 2018

5

Orengo CA

1 reference

4 February 2018

Bray JE

1

1 reference

4 February 2018

Todd AE

series ordinal

2

1 reference

4 February 2018

publication date

1 March 2000

1 reference

4 February 2018

Protein Engineering Design and Selection

published in

1 reference

4 February 2018

volume

13

1 reference

4 February 2018

issue

3

1 reference

4 February 2018

page(s)

153-165

1 reference

4 February 2018

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

cites work

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

PRINTS prepares for the new millennium.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

The ENZYME data bank in 1999

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

Predicting functions from protein sequences--where are the bottlenecks?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

Understanding protein structure: using scop for fold interpretation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

Population statistics of protein structures: lessons from structural classifications

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

Principles that determine the structure of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

Recent improvements of the ProDom database of protein domain families

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

A systematic comparison of protein structure classifications: SCOP, CATH and FSSP

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

The PROSITE database, its status in 1999

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

Protein structure comparison by alignment of distance matrices

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

Protein folds and families: sequence and structure alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

SCOP: a Structural Classification of Proteins database.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

Structure, evolution and action of vitamin B6-dependent enzymes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

Three-dimensional structure analysis of PROSITE patterns

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

PDBsum: a Web-based database of summaries and analyses of all PDB structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

MMDB: Entrez's 3D structure database

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

Protein folds and functions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

Raster3D: photorealistic molecular graphics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

Sequences annotated by structure: a tool to facilitate the use of structural information in sequence analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

HOMSTRAD: a database of protein structure alignments for homologous families

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

JOY: protein sequence-structure representation and analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

Structural classification of proteins: new superfamilies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

How far divergent evolution goes in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

A general method applicable to the search for similarities in the amino acid sequence of two proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

CORA--topological fingerprints for protein structural families

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

Fast structure alignment for protein databank searching

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

Protein superfamilies and domain superfolds

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

CATH--a hierarchic classification of protein domain structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

The CATH Database provides insights into protein structure/function relationships.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

Intermediate sequences increase the detection of homology between sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

Assigning genomic sequences to CATH

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

SMART: identification and annotation of domains from signalling and extracellular protein sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

Twilight zone of protein sequence alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

Multiple protein sequence alignment from tertiary structure comparison: assignment of global and residue confidence levels

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

Genome analysis: Assigning protein coding regions to three-dimensional structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

Combining sensitive database searches with multiple intermediates to detect distant homologues

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

Correlation of observed fold frequency with the occurrence of local structural motifs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

Database of homology-derived protein structures and the structural meaning of sequence alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

RASMOL: biomolecular graphics for all

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

LPFC: an Internet library of protein family core structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

An automatic method involving cluster analysis of secondary structures for the identification of domains in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

A database of globular protein structural domains: clustering of representative family members into similar folds

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

CAMPASS: a database of structurally aligned protein superfamilies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

Residual colours: a proposal for aminochromography.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

Protein structure alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

DOMPLOT: a program to generate schematic diagrams of the structural domain organization within proteins, annotated by ligand contacts.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

Evolution of protein function, from a structural perspective

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

An atlas of protein topology cartoons available on the World-Wide Web.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

Comparison of solvent-inaccessible cores of homologous proteins: definitions useful for protein modelling

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

A protein structure comparison methodology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

Recognition of analogous and homologous protein folds: analysis of sequence and structure conservation 1 1Edited by F. E. Cohen

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

Tertiary structural constraints on protein evolutionary diversity: templates, key residues and structure prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.3.153

21 January 2018

Identifiers

DOI

10.1093/PROTEIN/13.3.153

1 reference

4 February 2018

1 reference

4 February 2018