Validation of protein models derived from experiment (Q47624675)

4 February 2018

review article

1 reference

title

Validation of protein models derived from experiment (English)

1 reference

4 February 2018

author

Roman A. Laskowski

series ordinal

1

1 reference

4 February 2018

Janet Thornton

series ordinal

3

1 reference

4 February 2018

author name string

MacArthur MW

series ordinal

2

1 reference

4 February 2018

publication date

1 October 1998

1 reference

4 February 2018

Current Opinion in Structural Biology

published in

1 reference

4 February 2018

volume

8

1 reference

4 February 2018

issue

5

1 reference

4 February 2018

page(s)

631-639

1 reference

4 February 2018

Knowledge-based validation of protein structure coordinates derived by X-ray crystallography and NMR spectroscopy

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

The benefits of atomic resolution.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

The Protein Data Bank: a computer-based archival file for macromolecular structures

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

Free R value: a novel statistical quantity for assessing the accuracy of crystal structures

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

Free R value: cross-validation in crystallography

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

Checking your imagination: applications of the free R value

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

Report of a workshop on the use of statistical validators in protein X-ray crystallography.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

A self-validation technique for protein structure refinement: the extended Hamilton test.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

Rfree and the rfree ratio. I. Derivation of expected values of cross-validation residuals used in macromolecular least-squares refinement.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

Determination of the relative precision of atoms in a macromolecular structure

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

Improved methods for building protein models in electron density maps and the location of errors in these models

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

Error estimates of protein structure coordinates and deviations from standard geometry by full-matrix refinement of gammaB- and betaB2-crystallin.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

RESTRAIN: restrained structure-factor least-squares refinement program for macromolecular structures

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

Accurate bond and angle parameters for X-ray protein structure refinement

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

Atomic resolution (1.0 A) crystal structure of Fusarium solani cutinase: stereochemical analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

A NOESY-HSQC simulation program, SPIRIT

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

Rotational diffusion anisotropy of proteins from simultaneous analysis of 15N and 13C alpha nuclear spin relaxation

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

Direct measurement of distances and angles in biomolecules by NMR in a dilute liquid crystalline medium

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

Use of dipolar 1H-15N and 1H-13C couplings in the structure determination of magnetically oriented macromolecules in solution

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

Validation of Protein Structure from Anisotropic Carbonyl Chemical Shifts in a Dilute Liquid Crystalline Phase

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

Quality assessment of NMR structures: a statistical survey.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

Discrepancies between the NMR and X-ray structures of uncomplexed barstar: analysis suggests that packing densities of protein structures determined by NMR are unreliable

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

Contact area difference (CAD): a robust measure to evaluate accuracy of protein models

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

Correction of the NMR structure of the ETS1/DNA complex

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

Solution structure of the spectrin repeat: a left-handed antiparallel triple-helical coiled-coil

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

The NMR solution conformation of unligated human cyclophilin A

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

Refined solution structure and backbone dynamics of HIV-1 Nef.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

Comparison of solution and crystal structures of maize nonspecific lipid transfer protein: a model for a potential in vivo lipid carrier protein

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

Crystallization and structure solution of p53 (residues 326-356) by molecular replacement using an NMR model as template

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

Automated NOESY interpretation with ambiguous distance restraints: the refined NMR solution structure of the pleckstrin homology domain from beta-spectrin

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

Solution structure and dynamics of linked cell attachment modules of mouse fibronectin containing the RGD and synergy regions: comparison with the human fibronectin crystal structure

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

Who checks the checkers? four validation tools applied to eight atomic resolution structures 1 1Edited by I. A. Wilson

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

PROCHECK: a program to check the stereochemical quality of protein structures

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

Deviations from standard atomic volumes as a quality measure for protein crystal structures

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

SQUID: a program for the analysis and display of data from crystallography and molecular dynamics

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

Errors in protein structures

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

Stereochemical quality of protein structure coordinates

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

Assessing protein structures with a non-local atomic interaction energy.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

Novel knowledge-based mean force potential at atomic level

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

VERIFY3D: assessment of protein models with three-dimensional profiles

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

Validation of protein models from Cα coordinates alone

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

Phi/psi-chology: Ramachandran revisited

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980156-5

7 January 2021

10.1016/S0959-440X(98)80156-5

Identifiers

DOI

1 reference

4 February 2018

PubMed ID

9818269

1 reference

4 February 2018