The ability of a variety of polymerases to synthesize past site-specific cis-syn, trans-syn-II, (6-4), and Dewar photoproducts of thymidylyl-(3'-->5')-thymidine (Q47681914)

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English	The ability of a variety of polymerases to synthesize past site-specific cis-syn, trans-syn-II, (6-4), and Dewar photoproducts of thymidylyl-(3'-->5')-thymidine	scientific article

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scholarly article

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Europe PubMed Central

PubMed publication ID

4 February 2018

http://europepmc.org/abstract/MED/9705333

The ability of a variety of polymerases to synthesize past site-specific cis-syn, trans-syn-II, (6-4), and Dewar photoproducts of thymidylyl-(3'-->5')-thymidine (English)

1 reference

Europe PubMed Central

PubMed publication ID

4 February 2018

http://europepmc.org/abstract/MED/9705333

John-Stephen Taylor

3

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Europe PubMed Central

PubMed publication ID

4 February 2018

http://europepmc.org/abstract/MED/9705333

author name string

Smith CA

1

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Europe PubMed Central

PubMed publication ID

4 February 2018

http://europepmc.org/abstract/MED/9705333

Baeten J

2

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Europe PubMed Central

PubMed publication ID

4 February 2018

http://europepmc.org/abstract/MED/9705333

language of work or name

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publication date

1 August 1998

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Europe PubMed Central

PubMed publication ID

4 February 2018

http://europepmc.org/abstract/MED/9705333

Journal of Biological Chemistry

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Europe PubMed Central

PubMed publication ID

4 February 2018

http://europepmc.org/abstract/MED/9705333

273

1 reference

Europe PubMed Central

PubMed publication ID

4 February 2018

http://europepmc.org/abstract/MED/9705333

34

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Europe PubMed Central

PubMed publication ID

4 February 2018

http://europepmc.org/abstract/MED/9705333

21933-21940

1 reference

Europe PubMed Central

PubMed publication ID

4 February 2018

http://europepmc.org/abstract/MED/9705333

Molecular mechanisms of ultraviolet radiation carcinogenesis

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A role for sunlight in skin cancer: UV-induced p53 mutations in squamous cell carcinoma

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Mutation hotspots due to sunlight in the p53 gene of nonmelanoma skin cancers.

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p53 gene mutations and photocarcinogenesis

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Somatic mutation theory, DNA repair rates, and the molecular epidemiology of p53 mutations

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Photochemistry of cytosine derivatives. 1. Photochemistry of thymidylyl-(3' leads to 5')-deoxycytidine

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Frequency and spectrum of mutations produced by a single cis-syn thymine-thymine cyclobutane dimer in a single-stranded vector

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21 January 2018

SOS-dependent replication past a single trans-syn T-T cyclobutane dimer gives a different mutation spectrum and increased error rate compared with replication past this lesion in uninduced cells

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The thymine-thymine pyrimidine-pyrimidone(6-4) ultraviolet light photoproduct is highly mutagenic and specifically induces 3' thymine-to-cytosine transitions in Escherichia coli

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Mutation spectra of M13 vectors containing site-specific Cis-Syn, Trans-Syn-I, (6-4), and Dewar pyrimidone photoproducts of thymidylyl-(3'-->5')-thymidine in Escherichia coli under SOS conditions.

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Fidelity of DNA synthesis by the Thermococcus litoralis DNA polymerase--an extremely heat stable enzyme with proofreading activity

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DNA sequence analysis with a modified bacteriophage T7 DNA polymerase

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Genetic and crystallographic studies of the 3',5'-exonucleolytic site of DNA polymerase I.

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Pre-steady-state kinetic analysis of processive DNA replication including complete characterization of an exonuclease-deficient mutant

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Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates

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Effects of arabinosylcytosine-substituted DNA on DNA/RNA hybrid stability and transcription by T7 RNA polymerase

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Self-coded 3'-extension of run-off transcripts produces aberrant products during in vitro transcription with T7 RNA polymerase

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Role of DNA polymerase 3'----5' exonuclease activity in the bypass of aminofluorene lesions in DNA.

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cis-syn thymine dimers are not absolute blocks to replication by DNA polymerase I of Escherichia coli in vitro.

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Use of single-turnover kinetics to study bulky adduct bypass by T7 DNA polymerase

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DNA polymerase action on benzo[a]pyrene-DNA adducts

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Replication inhibition and translesion synthesis on templates containing site- specifically placed cis-diamminedichloroplatinum(II) DNA adducts

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Effect of single DNA lesions on in vitro replication with DNA polymerase III holoenzyme. Comparison with other polymerases

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Quantitation of base substitutions and deletions induced by chemical mutagens during DNA synthesis in vitro.

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DNA synthesis arrest at C4'-modified deoxyribose residues.

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Taq DNA polymerase blockage at pyrimidine dimers

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Structure andin vitroreplication of DNA templates containing 7,8-dihydro-8-oxoadenine

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Analysis of DNA damage and repair in murine leukemia L1210 cells using a quantitative polymerase chain reaction assay

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An improved method for photofootprinting yeast genes in vivo using Taq polymerase

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High resolution mapping of UV-induced photoproducts in the Escherichia coli lacI gene. Inefficient repair of the non-transcribed strand correlates with high mutation frequency.

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Gene and transcription unit mapping by radiation effects

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Molecular mechanism of transcription-repair coupling.

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Mechanisms of DNA excision repair

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Transcript cleavage by RNA polymerase II arrested by a cyclobutane pyrimidine dimer in the DNA template

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T7 RNA polymerase bypass of large gaps on the template strand reveals a critical role of the nontemplate strand in elongation

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Template strand gap bypass is a general property of prokaryotic RNA polymerases: implications for elongation mechanisms.

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Sites of termination of in vitro DNA synthesis on ultraviolet- and N-acetylaminofluorene-treated phi X174 templates by prokaryotic and eukaryotic DNA polymerases

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Differential tolerance to DNA polymerization by HIV-1 reverse transcriptase on N6 adenine C10R and C10S benzo[a]pyrene-7,8-dihydrodiol 9,10-epoxide-adducted templates

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1H NMR study of the exchangeable protons of the duplex d(GCGTTGCG).d(CGCAACGC) containing a thymine photodimer

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1H NMR assignment and melting temperature study of cis-syn and trans-syn thymine dimer containing duplexes of d(CGTATTATGC).d(GCATAATACG).

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Solution-state structure of the Dewar pyrimidinone photoproduct of thymidylyl-(3'----5')-thymidine

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Minimal kinetic mechanism for misincorporation by DNA polymerase I (Klenow fragment)

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An induced-fit kinetic mechanism for DNA replication fidelity: direct measurement by single-turnover kinetics

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Production of UV-induced frameshift mutations in vitro by DNA polymerases deficient in 3'-->5' exonuclease activity

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PCNA-induced DNA synthesis past cis-syn and trans-syn-I thymine dimers by calf thymus DNA polymerase delta in vitro

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Proliferating cell nuclear antigen promotes DNA synthesis past template lesions by mammalian DNA polymerase delta

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The role of DNA polymerase in base substitution mutagenesis on non-instructional templates.

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The 'A rule' of mutagen specificity: a consequence of DNA polymerase bypass of non-instructional lesions?

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Mutagenic properties of the T-C cyclobutane dimer

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Accuracy of replication past the T-C (6-4) adduct.

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Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 A resolution

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Crystal structures of human DNA polymerase beta complexed with gapped and nicked DNA: evidence for an induced fit mechanism

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Visualizing DNA replication in a catalytically active Bacillus DNA polymerase crystal

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The fidelity of base selection by the polymerase subunit of DNA polymerase III holoenzyme

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Comparative efficiency of forming m4T.G versus m4T.A base pairs at a unique site by use of Escherichia coli DNA polymerase I (Klenow fragment) and Drosophila melanogaster polymerase alpha-primase complex

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Difluorotoluene, a Nonpolar Isostere for Thymine, Codes Specifically and Efficiently for Adenine in DNA Replication

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Hydrogen bonding revisited: geometric selection as a principal determinant of DNA replication fidelity

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Repair by human cell extracts of single (6-4) and cyclobutane thymine-thymine photoproducts in DNA

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In vitro evidence that UV-induced frameshift and substitution mutations at T tracts are the result of misalignment-mediated replication past a specific thymine dimer.

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The frequency and accuracy of replication past a thymine-thymine cyclobutane dimer are very different in Saccharomyces cerevisiae and Escherichia coli

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Mutagenesis induced by single UV photoproducts in E. coli and yeast

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Accelerated deamination of cytosine residues in UV-induced cyclobutane pyrimidine dimers leads to CC-->TT transitions.

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Deamination of cytosine-containing pyrimidine photodimers in UV-irradiated DNA. Significance for UV light mutagenesis.

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Identification and structure determination of a third cyclobutane photodimer of thymidylyl-(3'-->5')-thymidine: the trans-syn-II product

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In vivo evidence that UV-induced C-->T mutations at dipyrimidine sites could result from the replicative bypass of cis-syn cyclobutane dimers or their deamination products

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Mechanism of bypass synthesis through an abasic site analog by DNA polymerase I

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Preparation and characterization of a deoxyoligonucleotide 49-mer containing a site-specific thymidylyl-(3',5')-deoxyadenosine photoproduct

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Primer Extension by Various Polymerases Using Oligonucleotide Templates Containing Stereoisomeric Benzo[a]pyrene-Deoxyadenosine Adducts

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Miscoding properties of model estrogen-DNA adducts in reactions catalyzed by mammalian and Escherichia coli DNA polymerases

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Translesional synthesis on a DNA template containing a single stereoisomer of dG-(+)- or dG-(-)-anti-BPDE (7,8-dihydroxy-anti-9,10-epoxy-7,8,9,10-tetrahydrobenzo[a]pyrene)

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A modified quantitative polymerase chain reaction assay for measuring gene-specific repair of UV photoproducts in human cells

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Transcription bypass or blockage at single-strand breaks on the DNA template strand: effect of different 3' and 5' flanking groups on the T7 RNA polymerase elongation complex

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Site-specific benzo[a]pyrene diol epoxide-DNA adducts inhibit transcription elongation by bacteriophage T7 RNA polymerase

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Template length, sequence context, and 3'-5' exonuclease activity modulate replicative bypass of thymine glycol lesions in vitro

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Contrasting structural impacts induced by cis-syn cyclobutane dimer and (6-4) adduct in DNA duplex decamers: implication in mutagenesis and repair activity

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In vitro mispairing specificity of O2-ethylthymidine

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Complete replication of plasmid DNA containing a single UV-induced lesion in human cell extracts

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The relative cytotoxicity of (6-4) photoproducts and cyclobutane dimers in mammalian cells

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Identifiers

10.1074/JBC.273.34.21933

1 reference

Europe PubMed Central

PubMed publication ID

4 February 2018

http://europepmc.org/abstract/MED/9705333

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

4 February 2018

http://europepmc.org/abstract/MED/9705333

ResearchGate publication ID

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