Real-Time Imaging of a Single Gene Reveals Transcription-Initiated Local Confinement. (Q47697599)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28978433%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

title

Real-Time Imaging of a Single Gene Reveals Transcription-Initiated Local Confinement (English)

1 reference

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31 March 2020

7

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31 March 2020

Nike Walther

3

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31 March 2020

Aurélien Bancaud

4

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31 March 2020

Haitham Ahmed Shaban

5

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Jan Ellenberg

8

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31 March 2020

author name string

Thomas Germier

1

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31 March 2020

Silvia Kocanova

2

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31 March 2020

Hafida Sellou

6

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31 March 2020

Franck Gallardo

9

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31 March 2020

Kerstin Bystricky

10

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31 March 2020

language of work or name

English

0 references

publication date

1 October 2017

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31 March 2020

number of pages

12

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inferred from page(s)

published in

Biophysical Journal

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31 March 2020

volume

113

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issue

7

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31 March 2020

page(s)

1383-1394

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describes a project that uses

31 March 2020

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC5627313/fullTextXML

inferred from PubMed Central ID database lookup

cites work

SAF-A Regulates Interphase Chromosome Structure through Oligomerization with Chromatin-Associated RNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Perspectives: using polymer modeling to understand the formation and function of nuclear compartments.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Dynamic Nucleosome Movement Provides Structural Information of Topological Chromatin Domains in Living Human Cells

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

SMARCA4 regulates gene expression and higher-order chromatin structure in proliferating mammary epithelial cells

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Stochastic Self-Assembly of ParB Proteins Builds the Bacterial DNA Segregation Apparatus.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

A review of progress in single particle tracking: from methods to biophysical insights

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Loss of lamin A function increases chromatin dynamics in the nuclear interior.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Why the activity of a gene depends on its neighbors

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Chromosome dynamics and folding in eukaryotes: Insights from live cell microscopy.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Simultaneous live imaging of the transcription and nuclear position of specific genes.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Principles of chromatin organization in yeast: relevance of polymer models to describe nuclear organization and dynamics

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Single cell visualization of transcription kinetics variance of highly mobile identical genes using 3D nanoimaging

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

High-throughput fluorescence correlation spectroscopy enables analysis of proteome dynamics in living cells

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Multicolor CRISPR labeling of chromosomal loci in human cells.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Guidelines for the fitting of anomalous diffusion mean square displacement graphs from single particle tracking experiments

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Dynamics of chromatin accessibility and long-range interactions in response to glucocorticoid pulsing

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Chromatin decondensation is sufficient to alter nuclear organization in embryonic stem cells.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Estrogen induces global reorganization of chromatin structure in human breast cancer cells

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Regulation of RNA polymerase II activation by histone acetylation in single living cells.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Genome-wide dynamics of Pol II elongation and its interplay with promoter proximal pausing, chromatin, and exons

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

ParB spreading requires DNA bridging.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Predictive polymer modeling reveals coupled fluctuations in chromosome conformation and transcription

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

DNA dynamics during early double-strand break processing revealed by non-intrusive imaging of living cells

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Relevance and limitations of crowding, fractal, and polymer models to describe nuclear architecture.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Dynamic imaging of genomic loci in living human cells by an optimized CRISPR/Cas system

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

High-throughput chromatin motion tracking in living yeast reveals the flexibility of the fiber throughout the genome

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Multiple Hypothesis Tracking for Cluttered Biological Image Sequences

26 August 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

26 August 2018

https://pubmed.ncbi.nlm.nih.gov/28978433

12 December 2020

inferred from PubMed ID database lookup

Mechanisms and functions of ATP-dependent chromatin-remodeling enzymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Real-time dynamics of RNA polymerase II clustering in live human cells

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

TIP48/Reptin and H2A.Z requirement for initiating chromatin remodeling in estrogen-activated transcription

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

In vivo live imaging of RNA polymerase II transcription factories in primary cells

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Structure and function in the budding yeast nucleus.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Centromere binding and evolution of chromosomal partition systems in the Burkholderiales

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Targeted INO80 enhances subnuclear chromatin movement and ectopic homologous recombination

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Yeast: an experimental organism for 21st Century biology

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Inhibiting eukaryotic transcription: Which compound to choose? How to evaluate its activity?

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Activation of estrogen-responsive genes does not require their nuclear co-localization

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

An oestrogen-receptor-α-bound human chromatin interactome

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Recruitment of polycomb group complexes and their role in the dynamic regulation of cell fate choice

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Triptolide is an inhibitor of RNA polymerase I and II-dependent transcription leading predominantly to down-regulation of short-lived mRNA.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Imaging transcription in living cells.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

A pyramid approach to subpixel registration based on intensity

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Transcription factories are nuclear subcompartments that remain in the absence of transcription

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

In vivo dynamics of RNA polymerase II transcription.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

SAGA interacting factors confine sub-diffusion of transcribed genes to the nuclear envelope

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Long-range directional movement of an interphase chromosome site

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Anomalous diffusion of proteins due to molecular crowding.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Feature point tracking and trajectory analysis for video imaging in cell biology.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Internal organisation of the nucleus: assembly of compartments by macromolecular crowding and the nuclear matrix model

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Active genes dynamically colocalize to shared sites of ongoing transcription

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Recruitment of distinct chromatin-modifying complexes by tamoxifen-complexed estrogen receptor at natural target gene promoters in vivo

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Estrogen receptor-alpha directs ordered, cyclical, and combinatorial recruitment of cofactors on a natural target promoter

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

The transcription cycle of RNA polymerase II in living cells.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Cofactor dynamics and sufficiency in estrogen receptor-regulated transcription

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Chromatin interaction mechanism of transcriptional control in vivo

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

In vivo localization of DNA sequences and visualization of large-scale chromatin organization using lac operator/repressor recognition

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627313

Single-allele analysis of transcription kinetics in living mammalian cells

26 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28978433

12 December 2020

inferred from PubMed ID database lookup

Nuclear pore association confers optimal expression levels for an inducible yeast gene

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28978433

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1016/J.BPJ.2017.08.014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28978433%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28978433%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

PubMed publication ID

28978433

1 reference