Stabilizing and destabilizing clusters in the hydrophobic core of long two-stranded alpha-helical coiled-coils (Q47951535)

7 February 2018

title

Stabilizing and destabilizing clusters in the hydrophobic core of long two-stranded alpha-helical coiled-coils (English)

1 reference

7 February 2018

1 reference

Stanley C Kwok

1

1 reference

7 February 2018

Robert S Hodges

series ordinal

2

1 reference

7 February 2018

language of work or name

English

0 references

publication date

11 March 2004

1 reference

7 February 2018

Journal of Biological Chemistry

published in

1 reference

7 February 2018

volume

279

1 reference

7 February 2018

issue

20

1 reference

7 February 2018

page(s)

21576-21588

1 reference

7 February 2018

Persistence of native-like topology in a denatured protein in 8 M urea

cites work

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Long-range interactions within a nonnative protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Periodicity of polar and nonpolar amino acids is the major determinant of secondary structure in self-assembling oligomeric peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Deciphering protein sequence information through hydrophobic cluster analysis (HCA): current status and perspectives.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Alpha-helical protein assembly motifs

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Boehringer Mannheim award lecture 1995. La conference Boehringer Mannheim 1995. De novo design of alpha-helical proteins: basic research to medical applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

MultiCoil: a program for predicting two- and three-stranded coiled coils

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Effects of side-chain characteristics on stability and oligomerization state of a de novo-designed model coiled-coil: 20 amino acid substitutions in position "d".

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

An engineered allosteric switch in leucine-zipper oligomerization

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

The contribution of residue ion pairs to the helical stability of a model peptide

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

The energetics of ion-pair and hydrogen-bonding interactions in a helical peptide

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Evaluation of the energetic contribution of interhelical Coulombic interactions for coiled coil helix orientation specificity

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Core side-chain packing and backbone conformation in Lpp-56 coiled-coil mutants

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

A thermodynamic scale for the helix-forming tendencies of the commonly occurring amino acids

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

A single-stranded amphipathic alpha-helix in aqueous solution: design, structural characterization, and its application for determining alpha-helical propensities of amino acids

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

The role of context on alpha-helix stabilization: host-guest analysis in a mixed background peptide model

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Helix capping interactions stabilize the N-terminus of the kinesin neck coiled-coil

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Helix-capping interaction in lambda Cro protein: a free energy simulation analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Helix capping in the GCN4 leucine zipper

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Defining the minimum size of a hydrophobic cluster in two-stranded alpha-helical coiled-coils: effects on protein stability

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Vertebrate tropomyosin: distribution, properties and function

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Local heterogeneity in the pressure denaturation of the coiled-coil tropomyosin because of subdomain folding units.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Functions of tropomyosin's periodic repeats

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Specific sequences determine the stability and cooperativity of folding of the C-terminal half of tropomyosin

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Helical peptide and protein design

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

De novo design of helical bundles as models for understanding protein folding and function.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Monoclonal anti-DNA antibodies: structure, specificity, and biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Analysis of synthetic peptides by high-performance liquid chromatography

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Analysis of data from the analytical ultracentrifuge by nonlinear least-squares techniques

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Determination of the helix and beta form of proteins in aqueous solution by circular dichroism.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl alpha-chymotrypsin using different denaturants

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Unfolding of a leucine zipper is not a simple two-state transition

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

A millennial myosin census

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Comparative sequence analysis of the complete human sarcomeric myosin heavy chain family: implications for functional diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Alpha-helical coiled coils and bundles: how to design an alpha-helical protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Predicting coiled coils from protein sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Effect of trifluoroethanol on protein secondary structure: an NMR and CD study using a synthetic actin peptide

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Disulfide bond contribution to protein stability: positional effects of substitution in the hydrophobic core of the two-stranded alpha-helical coiled-coil

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

21 January 2018

Hydrophobicity regained.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Alpha-helix-to-random-coil transitions of two-chain, coiled coils: a theoretical model for the "pretransition" in cysteine-190-cross-linked tropomyosin

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Periodicity of amide proton exchange rates in a coiled-coil leucine zipper peptide

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Thermal unfolding in a GCN4-like leucine zipper: 13C alpha NMR chemical shifts and local unfolding curves

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Deciphering the design of the tropomyosin molecule

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Local destabilization of the tropomyosin coiled coil gives the molecular flexibility required for actin binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Preferential Heterodimeric Parallel Coiled-coil Formation by Synthetic Max and c-Myc Leucine Zippers: A Description of Putative Electrostatic Interactions Responsible for the Specificity of Heterodimerization

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Side chain dynamics in unfolded protein states: an NMR based 2H spin relaxation study of delta131delta

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

De novo design of a model peptide sequence to examine the effects of single amino acid substitutions in the hydrophobic core on both stability and oligomerization state of coiled-coils

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Salt effects on protein stability: two-stranded alpha-helical coiled-coils containing inter- or intrahelical ion pairs

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Orientation, positional, additivity, and oligomerization-state effects of interhelical ion pairs in alpha-helical coiled-coils

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Energetic contribution of solvent-exposed ion pairs to alpha-helix structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Formation of parallel and antiparallel coiled-coils controlled by the relative positions of alanine residues in the hydrophobic core

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Electrostatic interactions control the parallel and antiparallel orientation of alpha-helical chains in two-stranded alpha-helical coiled-coils

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Effect of chain length on the formation and stability of synthetic alpha-helical coiled coils

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Clustering of large hydrophobes in the hydrophobic core of two-stranded alpha-helical coiled-coils controls protein folding and stability

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

Effects of tropomyosin internal deletions on thin filament function

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

The heat capacity of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M401074200

21 January 2018

Identifiers

DOI

10.1074/JBC.M401074200

1 reference

7 February 2018

release_jtakgy2a2jdnzhv5kvv5azf3cu

Fatcat ID

0 references

PubMed ID

15020585

1 reference

7 February 2018