Impact of the terminal bulges of HIV-1 cTAR DNA on its stability and the destabilizing activity of the nucleocapsid protein NCp7. (Q47989062)

7 February 2018

title

Impact of the terminal bulges of HIV-1 cTAR DNA on its stability and the destabilizing activity of the nucleocapsid protein NCp7. (English)

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7 February 2018

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6

Bernard Roques

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7 February 2018

1

Hervé Beltz

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7 February 2018

Damien Ficheux

5

object named as

Damien Ficheux

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7 February 2018

Jean-Luc Darlix

7

object named as

Jean-Luc Darlix

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7 February 2018

author name string

Joel Azoulay

2

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7 February 2018

Serena Bernacchi

3

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7 February 2018

Jean-Pierre Clamme

4

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7 February 2018

Yves Mély

8

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7 February 2018

language of work or name

English

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publication date

1 April 2003

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7 February 2018

Journal of Molecular Biology

number of pages

14

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based on heuristic

inferred from page(s)

published in

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7 February 2018

volume

328

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7 February 2018

issue

1

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7 February 2018

page(s)

95-108

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7 February 2018

Possible roles of HIV-1 nucleocapsid protein in the specificity of proviral DNA synthesis and in its variability

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Analysis of the nucleic acid annealing activities of nucleocapsid protein from HIV-1.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Functional sites in the 5' region of human immunodeficiency virus type 1 RNA form defined structural domains

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

The mechanism of actinomycin D-mediated inhibition of HIV-1 reverse transcription

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Human immunodeficiency virus type 1 nucleocapsid protein can prevent self-priming of minus-strand strong stop DNA by promoting the annealing of short oligonucleotides to hairpin sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Influence of human immunodeficiency virus nucleocapsid protein on synthesis and strand transfer by the reverse transcriptase in vitro

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Recombinant HIV-1 nucleocapsid protein accelerates HIV-1 reverse transcriptase catalyzed DNA strand transfer reactions and modulates RNase H activity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Evidence for a unique mechanism of strand transfer from the transactivation response region of HIV-1

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Zinc finger structures in the human immunodeficiency virus type 1 nucleocapsid protein facilitate efficient minus- and plus-strand transfer

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Human immunodeficiency virus nucleocapsid protein stimulates strand transfer from internal regions of heteropolymeric RNA templates

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Actinomycin D inhibition of DNA strand transfer reactions catalyzed by HIV-1 reverse transcriptase and nucleocapsid protein

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Transactivation of the minus-strand DNA transfer by nucleocapsid protein during reverse transcription of the retroviral genome.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Assembling the human immunodeficiency virus type 1.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

First glimpses at structure-function relationships of the nucleocapsid protein of retroviruses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Nucleic-acid-chaperone activity of retroviral nucleocapsid proteins: significance for viral replication

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

The ubiquitous nature of RNA chaperone proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

HIV-1 nucleocapsid protein zinc finger structures induce tRNA(Lys,3) structural changes but are not critical for primer/template annealing

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Mechanism for nucleic acid chaperone activity of HIV-1 nucleocapsid protein revealed by single molecule stretching.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

A mechanism for plus-strand transfer enhancement by the HIV-1 nucleocapsid protein during reverse transcription

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

HIV-1 nucleocapsid protein activates transient melting of least stable parts of the secondary structure of TAR and its complementary sequence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Destabilization of the HIV-1 complementary sequence of TAR by the nucleocapsid protein through activation of conformational fluctuations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Nucleic acid conformational changes essential for HIV-1 nucleocapsid protein-mediated inhibition of self-priming in minus-strand transfer

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Melting studies of short DNA hairpins: influence of loop sequence and adjoining base pair identity on hairpin thermodynamic stability

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Thermodynamic characterization of deoxyribooligonucleotide duplexes containing bulges.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Hairpin formation in synthetic oligonucleotides

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Structural features in the HIV-1 repeat region facilitate strand transfer during reverse transcription

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Exciton interaction in molecular beacons: a sensitive sensor for short range modifications of the nucleic acid structure

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Excitonic heterodimer formation in an HIV-1 oligonucleotide labeled with a donor-acceptor pair used for fluorescence resonance energy transfer

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Nucleic acid sequence discrimination by the HIV-1 nucleocapsid protein NCp7: a fluorescence study

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Biological and chemical applications of fluorescence correlation spectroscopy: a review

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Kinetics of conformational fluctuations in DNA hairpin-loops

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Thermodynamic parameters for loop formation in RNA and DNA hairpin tetraloops

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Influence of loop residues on the relative stabilities of DNA hairpin structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Effects of base sequence on the loop folding in DNA hairpins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Thermal stability of RNA hairpins containing a four-membered loop and a bulge nucleotide

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Thermodynamic parameters for an expanded nearest-neighbor model for the formation of RNA duplexes with single nucleotide bulges

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Thermodynamic and spectroscopic study of bulge loops in oligoribonucleotides.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Proton nuclear magnetic resonance studies on bulge-containing DNA oligonucleotides from a mutational hot-spot sequence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Thermodynamics and NMR of internal G.T mismatches in DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Heat capacity effects on the melting of DNA. 2. Analysis of nearest-neighbor base pair effects

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Heat capacity effects on the melting of DNA. 1. General aspects.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

The effect of cross-links on the conformational dynamics of duplex DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Terminal base pairs of oligodeoxynucleotides: imino proton exchange and fraying

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Evidence from base-pair kinetics for two types of adenine tract structures in solution: their relation to DNA curvature

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Structural requirement for the two-step dimerization of human immunodeficiency virus type 1 genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Mapping the RNA binding sites for human immunodeficiency virus type-1 gag and NC proteins within the complete HIV-1 and -2 untranslated leader regions.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Properties of the Avian Viral Protein p12

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

HIV-1 nucleocapsid protein as a nucleic acid chaperone: spectroscopic study of its helix-destabilizing properties, structural binding specificity, and annealing activity

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1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Heteronuclear NMR studies of the interaction of tRNA3Lys with HIV-1 nucleocapsid protein11Edited by M. F. Summers

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1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Binding of the HIV-1 nucleocapsid protein to the primer tRNA(3Lys), in vitro, is essentially not specific

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1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

The human immunodeficiency virus type 1 TAR RNA upper stem-loop plays distinct roles in reverse transcription and RNA packaging

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1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Forced evolution of a regulatory RNA helix in the HIV-1 genome

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1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Evolution of a disrupted TAR RNA hairpin structure in the HIV-1 virus.

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1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Thermodynamics of DNA interactions from single molecule stretching experiments.

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1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

First large scale chemical synthesis of the 72 amino acid HIV-1 nucleocapsid protein NCp7 in an active form.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Analyzing the distribution of decay constants in pulse-fluorimetry using the maximum entropy method

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Monitoring of the formation and dissociation of polyethylenimine/DNA complexes by two photon fluorescence correlation spectroscopy

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1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

Human immunodeficiency virus type 1 reverse transcriptase and early events in reverse transcription

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1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

inferred from DOI database lookup

7 January 2021

based on heuristic

RNA secondary structure and binding sites for gag gene products in the 5' packaging signal of human immunodeficiency virus type 1.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900244-4

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1016/S0022-2836(03)00244-4

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7 February 2018

PubMed ID

12684000

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7 February 2018