A whole-genome SNP array (RICE6K) for genomic breeding in rice (Q48037741)

7 February 2018

title

A whole-genome SNP array (RICE6K) for genomic breeding in rice (English)

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7 February 2018

main subject

whole genome sequencing

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Weibo Xie

2

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Qifa Zhang

5

object named as

Qifa Zhang

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7 February 2018

author name string

Huihui Yu

1

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7 February 2018

Jing Li

3

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7 February 2018

Fasong Zhou

4

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7 February 2018

publication date

13 September 2013

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7 February 2018

Plant Biotechnology Journal

published in

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7 February 2018

volume

12

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7 February 2018

issue

1

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page(s)

28-37

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7 February 2018

Positional cloning of the rice Rf-1 gene, a restorer of BT-type cytoplasmic male sterility that encodes a mitochondria-targeting PPR protein

cites work

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Large-scale identification of single-feature polymorphisms in complex genomes

21 January 2018

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Selecting a maximally informative set of single-nucleotide polymorphisms for association analyses using linkage disequilibrium

21 January 2018

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Badh2, encoding betaine aldehyde dehydrogenase, inhibits the biosynthesis of 2-acetyl-1-pyrroline, a major component in rice fragrance

21 January 2018

1 reference

Genetic architecture of maize kernel composition in the nested association mapping and inbred association panels

21 January 2018

1 reference

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

21 January 2018

1 reference

Genetic architecture of aluminum tolerance in rice (Oryza sativa) determined through genome-wide association analysis and QTL mapping

21 January 2018

1 reference

GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein

21 January 2018

1 reference

A large maize (Zea mays L.) SNP genotyping array: development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome

21 January 2018

1 reference

Array-based high-throughput DNA markers for crop improvement

21 January 2018

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The rice pentatricopeptide repeat protein RF5 restores fertility in Hong-Lian cytoplasmic male-sterile lines via a complex with the glycine-rich protein GRP162.

21 January 2018

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The isolation of Pi1, an allele at the Pik locus which confers broad spectrum resistance to rice blast.

21 January 2018

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High-throughput genotyping by whole-genome resequencing.

21 January 2018

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Genome-wide association studies of 14 agronomic traits in rice landraces.

21 January 2018

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Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm.

21 January 2018

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Diversity arrays: a solid state technology for sequence information independent genotyping

21 January 2018

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Rice functional genomics research: progress and implications for crop genetic improvement

21 January 2018

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Mapping short DNA sequencing reads and calling variants using mapping quality scores

21 January 2018

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Inheritance and molecular mapping of two fertility-restoring loci for Honglian gametophytic cytoplasmic male sterility in rice (Oryza sativaL.).

21 January 2018

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Linking differential domain functions of the GS3 protein to natural variation of grain size in rice

21 January 2018

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Genomewide SNP variation reveals relationships among landraces and modern varieties of rice

21 January 2018

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Sequencing technologies - the next generation

21 January 2018

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Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations

21 January 2018

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Marker-assisted selection for disease resistance in wheat and barley breeding

21 January 2018

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RAD marker microarrays enable rapid mapping of zebrafish mutations

21 January 2018

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Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers

21 January 2018

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The broad-spectrum blast resistance gene Pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice

21 January 2018

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Deletion in a gene associated with grain size increased yields during rice domestication

21 January 2018

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A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase

21 January 2018

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Whole genome genotyping technologies on the BeadArray platform

21 January 2018

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Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice

21 January 2018

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QTL scanning for rice yield using a whole genome SNP array

21 January 2018

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High-throughput single nucleotide polymorphism genotyping for breeding applications in rice using the BeadXpress platform

21 January 2018

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Development of a Research Platform for Dissecting Phenotype–Genotype Associations in Rice (Oryza spp.)

21 January 2018

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Next-generation sequencing technologies and their implications for crop genetics and breeding

21 January 2018

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Cytoplasmic male sterility of rice with boro II cytoplasm is caused by a cytotoxic peptide and is restored by two related PPR motif genes via distinct modes of mRNA silencing

21 January 2018

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A global analysis of QTLs for expression variations in rice shoots at the early seedling stage

21 January 2018

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Mapping 49 quantitative trait loci at high resolution through sequencing-based genotyping of rice recombinant inbred lines

21 January 2018

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Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight

21 January 2018

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Single feature polymorphisms between two rice cultivars detected using a median polish method

21 January 2018

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Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing.

21 January 2018

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Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice.

21 January 2018

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Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms

21 January 2018

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Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS.

21 January 2018

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Gains in QTL detection using an ultra-high density SNP map based on population sequencing relative to traditional RFLP/SSR markers

21 January 2018

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Genomic diversity and introgression in O. sativa reveal the impact of domestication and breeding on the rice genome

21 January 2018

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Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa

21 January 2018

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The eight amino-acid differences within three leucine-rich repeats between Pi2 and Piz-t resistance proteins determine the resistance specificity to Magnaporthe grisea

21 January 2018

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Molecular mapping of the fertility-restoration gene Rf4 for WA-cytoplasmic male sterility in rice

21 January 2018

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21 January 2018

Identifiers

DOI

10.1111/PBI.12113

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7 February 2018

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7 February 2018