The effect of paralogous lineages on the application of reconciliation analysis by cophylogeny mapping (Q48144454)

9 February 2018

title

The effect of paralogous lineages on the application of reconciliation analysis by cophylogeny mapping (English)

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9 February 2018

author name string

Andrew Jackson

series ordinal

1

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9 February 2018

publication date

1 February 2005

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9 February 2018

published in

Systematic Biology

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9 February 2018

volume

54

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9 February 2018

issue

1

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9 February 2018

page(s)

127-145

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9 February 2018

A new phylogenetic marker, apolipoprotein B, provides compelling evidence for eutherian relationships

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Mammalian mitogenomic relationships and the root of the eutherian tree

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Coevolution of papillomaviruses with human populations

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Isolation of cytomegalovirus and foamy virus from the drill monkey (Mandrillus leucophaeus) and prevalence of antibodies to these viruses amongst wild-born and captive-bred individuals

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Conserved domains of glycoprotein B (gB) of the monkey virus, simian agent 8, identified by comparison with herpesvirus gBs.

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Transmission of human papillomavirus type 11 infection by desquamated cornified cells

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Phylogenetic analysis of GB viruses A and C: evidence for cospeciation between virus isolates and their primate hosts

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Detection and multigenic characterization of a novel gammaherpesvirus in goats

21 January 2018

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Biology and disease associations of Epstein-Barr virus

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Novel gamma-1 herpesviruses identified in free-ranging new world monkeys (golden-handed tamarin [Saguinus midas], squirrel monkey [Saimiri sciureus], and white-faced saki [Pithecia pithecia]) in French Guiana

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Bovine papillomavirus transmission and chromosomal aberrations: an experimental model.

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Novel simian homologues of Epstein-Barr virus

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Molecular dating and biogeography of the early placental mammal radiation.

21 January 2018

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Distinguishing Homologous from Analogous Proteins

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Potential strategies utilised by papillomavirus to evade host immunity

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Estimation of divergence times for major lineages of primate species

21 January 2018

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Characterization of phocid herpesvirus-1 and -2 as putative alpha- and gammaherpesviruses of North American and European pinnipeds

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Reptile adenoviruses in cattle?

21 January 2018

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Molecular and morphological phylogenies of ruminantia and the alternative position of the moschidae

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Identification of new herpesvirus gene homologs in the human genome

21 January 2018

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RNA-based phylogenetic methods: application to mammalian mitochondrial RNA sequences

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Primates and their pinworm parasites: the cameron hypothesis revisited

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Antigenic and nucleotide characterization of a herpesvirus isolated from Pacific harbor seals (Phoca vitulina richardsii).

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Malignant catarrhal fever-like disease in Barbary red deer (Cervus elaphus barbarus) naturally infected with a virus resembling alcelaphine herpesvirus 2.

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A novel gamma 2-herpesvirus of the Rhadinovirus 2 lineage in chimpanzees

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Evidence of three new members of malignant catarrhal fever virus group in muskox (Ovibos moschatus), Nubian ibex (Capra nubiana), and gemsbok (Oryx gazella).

21 January 2018

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Recognition of another member of the malignant catarrhal fever virus group: an endemic gammaherpesvirus in domestic goats

21 January 2018

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21 January 2018

Virus taxonomy--1997.

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Molecular phylogeny and evolutionary timescale for the family of mammalian herpesviruses

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Toward a comprehensive phylogeny for mammalian and avian herpesviruses

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The role of human papillomaviruses in human cancers

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Evasion of host immunity directed by papillomavirus-encoded proteins

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COMPONENT ANALYSIS: A VALIANT FAILURE?

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From gene to organismal phylogeny: reconciled trees and the gene tree/species tree problem

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Trees within trees: phylogeny and historical associations

21 January 2018

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Analytical approaches to measuring cospeciation of host and parasites: through a glass, darkly

21 January 2018

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Herpesvirus homologues of cellular genes

21 January 2018

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The family Herpesviridae: an update. The Herpesvirus Study Group of the International Committee on Taxonomy of Viruses

21 January 2018

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Vicariant Patterns and Historical Explanation in Biogeography

21 January 2018

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Coevolution of persistently infecting small DNA viruses and their hosts linked to host-interactive regulatory domains

21 January 2018

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Immunological characterization of the feline herpesvirus-1 glycoprotein B and analysis of its deduced amino acid sequence

21 January 2018

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Placental mammal diversification and the Cretaceous-Tertiary boundary

21 January 2018

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Characterization of rhesus cytomegalovirus genes associated with anti-viral susceptibility

21 January 2018

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The DNA sequence of equine herpesvirus-1

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The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

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Evolution of herpes simplex virus type 1 under herpesviral evolutionary processes

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The out of Africa model of varicella-zoster virus evolution: single nucleotide polymorphisms and private alleles distinguish Asian clades from European/North American clades

21 January 2018

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Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods

21 January 2018

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Estimation of primate speciation dates using local molecular clocks

21 January 2018

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Analysis of genetic variability of populations of herpes simplex viruses

21 January 2018

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10.1080/10635150590905911

21 January 2018

Identifiers

DOI

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9 February 2018

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9 February 2018