An improved toolbox to unravel the plant cellular machinery by tandem affinity purification of Arabidopsis protein complexes. (Q48243869)

9 February 2018

title

An improved toolbox to unravel the plant cellular machinery by tandem affinity purification of Arabidopsis protein complexes. (English)

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9 February 2018

author

Jelle Van Leene

1

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9 February 2018

Klaas Vandepoele

10

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9 February 2018

Geert De Jaeger

14

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9 February 2018

Lennart Martens

11

object named as

Lennart Martens

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9 February 2018

author name string

Dominique Eeckhout

2

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9 February 2018

Bernard Cannoot

3

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9 February 2018

Nancy De Winne

4

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9 February 2018

Geert Persiau

5

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9 February 2018

Eveline Van De Slijke

6

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9 February 2018

Leen Vercruysse

7

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9 February 2018

Maarten Dedecker

8

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Aurine Verkest

9

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Erwin Witters

12

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9 February 2018

Kris Gevaert

13

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publication date

18 December 2014

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9 February 2018

published in

Nature Protocols

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9 February 2018

volume

10

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9 February 2018

issue

1

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9 February 2018

page(s)

169-187

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9 February 2018

https://scigraph.springernature.com/pub.10.1038/nprot.2014.199

exact match

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cites work

Plant protein interactomes

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

A kaleidoscopic view of the Arabidopsis core cell cycle interactome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Evidence for network evolution in an Arabidopsis interactome map.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Rapid one-step protein purification from plant material using the eight-amino acid StrepII epitope.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Proteomics-based identification of low-abundance signaling and regulatory protein complexes in native plant tissues

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Looking deep inside: detection of low-abundance proteins in leaf extracts of Arabidopsis and phloem exudates of pumpkin

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

A generic protein purification method for protein complex characterization and proteome exploration

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Boosting tandem affinity purification of plant protein complexes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

The tandem affinity purification (TAP) method: a general procedure of protein complex purification

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Proteome organization in a genome-reduced bacterium

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Proteome survey reveals modularity of the yeast cell machinery

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Systematic analysis of human protein complexes identifies chromosome segregation proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Interaction network containing conserved and essential protein complexes in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Isolation of transcription factor complexes from Arabidopsis cell suspension cultures by tandem affinity purification

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

A tandem affinity purification-based technology platform to study the cell cycle interactome in Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

The DNA replication checkpoint aids survival of plants deficient in the novel replisome factor ETG1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

The MCM-binding protein ETG1 aids sister chromatid cohesion required for postreplicative homologous recombination repair

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

NINJA connects the co-repressor TOPLESS to jasmonate signalling

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

The TPLATE adaptor complex drives clathrin-mediated endocytosis in plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

A protein phosphatase 2A complex spatially controls plant cell division

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

SAMBA, a plant-specific anaphase-promoting complex/cyclosome regulator is involved in early development and A-type cyclin stabilization

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Arabidopsis ULTRAVIOLET-B-INSENSITIVE4 maintains cell division activity by temporal inhibition of the anaphase-promoting complex/cyclosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

ERF115 controls root quiescent center cell division and stem cell replenishment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

An efficient tandem affinity purification procedure for interaction proteomics in mammalian cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

The tandem affinity purification method: an efficient system for protein complex purification and protein interaction identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

The tandem affinity purification technology: an overview

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Tandem affinity purification in Drosophila: the advantages of the GS-TAP system.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

A highly efficient multifunctional tandem affinity purification approach applicable to diverse organisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Structure of the core editing complex (L-complex) involved in uridine insertion/deletion RNA editing in trypanosomatid mitochondria

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

The heteromultimeric debranching enzyme involved in starch synthesis in Arabidopsis requires both isoamylase1 and isoamylase2 subunits for complex stability and activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Constitutively active UVR8 photoreceptor variant in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Genome-scale Arabidopsis promoter array identifies targets of the histone acetyltransferase GCN5.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Evidence for a role of Arabidopsis CDT1 proteins in gametophyte development and maintenance of genome integrity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Adaptin-like protein TPLATE and clathrin recruitment during plant somatic cytokinesis occurs via two distinct pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

CDKB1;1 forms a functional complex with CYCA2;3 to suppress endocycle onset.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Mitochondrial type-I prohibitins of Arabidopsis thaliana are required for supporting proficient meristem development

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Centromeric cohesion is protected twice at meiosis, by SHUGOSHINs at anaphase I and by PATRONUS at interkinesis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Auxin-dependent cell cycle reactivation through transcriptional regulation of Arabidopsis E2Fa by lateral organ boundary proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Plant Elongator regulates auxin-related genes during RNA polymerase II transcription elongation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

The Arabidopsis bHLH transcription factors MYC3 and MYC4 are targets of JAZ repressors and act additively with MYC2 in the activation of jasmonate responses.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Dissection of the one-MegaDalton JAZ1 protein complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

PYRABACTIN RESISTANCE1-LIKE8 plays an important role for the regulation of abscisic acid signaling in root

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

The clathrin adaptor complex AP-2 mediates endocytosis of brassinosteroid insensitive1 in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

MTV1 and MTV4 encode plant-specific ENTH and ARF GAP proteins that mediate clathrin-dependent trafficking of vacuolar cargo from the trans-Golgi network.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Retromer subunits VPS35A and VPS29 mediate prevacuolar compartment (PVC) function in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Protein-protein and protein-membrane associations in the lignin pathway.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Synchronous Arabidopsis suspension cultures for analysis of cell-cycle gene activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

A generic tool for transcription factor target gene discovery in Arabidopsis cell suspension cultures based on tandem chromatin affinity purification.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

The transience of transient overexpression

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Parallel proteomic and phosphoproteomic analyses of successive stages of maize leaf development

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Decoy Methods for Assessing False Positives and False Discovery Rates in Shotgun Proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Dissecting plant genomes with the PLAZA comparative genomics platform

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

AmiGO: online access to ontology and annotation data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Assignment of protein interactions from affinity purification/mass spectrometry data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Cytoscape: a software environment for integrated models of biomolecular interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Agrobacterium-mediated transformation of Arabidopsis thaliana using the floral dip method

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Quantitative proteomics combined with BAC TransgeneOmics reveals in vivo protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

CORNET 2.0: integrating plant coexpression, protein-protein interactions, regulatory interactions, gene associations and functional annotations

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

Purification of a plant mediator from Arabidopsis thaliana identifies PFT1 as the Med25 subunit

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

The transcription factor AtGRF5 and the transcription coactivator AN3 regulate cell proliferation in leaf primordia of Arabidopsis thaliana

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.199

31 March 2020

Identifiers

DOI

10.1038/NPROT.2014.199

1 reference

9 February 2018

PubMed ID

25521792

1 reference

9 February 2018