Annotation of a 95-kb Populus deltoides genomic sequence reveals a disease resistance gene cluster and novel class I and class II transposable elements. (Q49141942)

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scientific article published on 14 April 2004

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English	Annotation of a 95-kb Populus deltoides genomic sequence reveals a disease resistance gene cluster and novel class I and class II transposable elements.	scientific article published on 14 April 2004

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

18 February 2018

http://europepmc.org/abstract/MED/15085260

Annotation of a 95-kb Populus deltoides genomic sequence reveals a disease resistance gene cluster and novel class I and class II transposable elements. (English)

1 reference

Europe PubMed Central

PubMed publication ID

18 February 2018

http://europepmc.org/abstract/MED/15085260

Populus deltoides

object named as

Populus deltoides

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based on heuristic

inferred from title

Stephane Rombauts

2

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Europe PubMed Central

PubMed publication ID

18 February 2018

http://europepmc.org/abstract/MED/15085260

6

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Europe PubMed Central

PubMed publication ID

18 February 2018

http://europepmc.org/abstract/MED/15085260

8

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Europe PubMed Central

PubMed publication ID

18 February 2018

http://europepmc.org/abstract/MED/15085260

author name string

M Lescot

1

1 reference

Europe PubMed Central

PubMed publication ID

18 February 2018

http://europepmc.org/abstract/MED/15085260

J Zhang

3

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Europe PubMed Central

PubMed publication ID

18 February 2018

http://europepmc.org/abstract/MED/15085260

S Aubourg

4

1 reference

Europe PubMed Central

PubMed publication ID

18 February 2018

http://europepmc.org/abstract/MED/15085260

C Mathé

5

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Europe PubMed Central

PubMed publication ID

18 February 2018

http://europepmc.org/abstract/MED/15085260

P Rouzé

7

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Europe PubMed Central

PubMed publication ID

18 February 2018

http://europepmc.org/abstract/MED/15085260

language of work or name

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publication date

14 April 2004

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Europe PubMed Central

PubMed publication ID

18 February 2018

http://europepmc.org/abstract/MED/15085260

Theoretical and Applied Genetics

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Europe PubMed Central

PubMed publication ID

18 February 2018

http://europepmc.org/abstract/MED/15085260

109

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Europe PubMed Central

PubMed publication ID

18 February 2018

http://europepmc.org/abstract/MED/15085260

1

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Europe PubMed Central

PubMed publication ID

18 February 2018

http://europepmc.org/abstract/MED/15085260

10-22

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Europe PubMed Central

PubMed publication ID

18 February 2018

http://europepmc.org/abstract/MED/15085260

Dense genetic linkage maps of three Populus species (Populus deltoides, P. nigra and P. trichocarpa) based on AFLP and microsatellite markers

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Physical interaction between RRS1-R, a protein conferring resistance to bacterial wilt, and PopP2, a type III effector targeted to the plant nucleus

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evaluation of gene prediction software using a genomic data set: application to Arabidopsis thaliana sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide-binding superfamily

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https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cloning and characterization of Vine-1, a LTR-retrotransposon-like element in Vitis vinifera L., and other Vitis species

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Arabidopsis RPP4 is a member of the RPP5 multigene family of TIR-NB-LRR genes and confers downy mildew resistance through multiple signalling components

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Current methods of gene prediction, their strengths and weaknesses

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https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of AFLP molecular markers for resistance against Melampsora larici-populina in Populus.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The transposable element Tam1 from Antirrhinum majus shows structural homology to the maize transposon En/Spm and has no sequence specificity of insertion

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sensitivity of different ecotypes and mutants of Arabidopsis thaliana toward the bacterial elicitor flagellin correlates with the presence of receptor-binding sites.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Intra- and interspecific inheritance of some components of the resistance to leaf rust (Melampsora larici-populina Kleb.) in poplars.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The evolution of disease resistance genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Divergent evolution of plant NBS-LRR resistance gene homologues in dicot and cereal genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolutionary dynamics of plant R-genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterisation of LTR sequences involved in the protoplast specific expression of the tobacco Tnt1 retrotransposon.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Base-calling of automated sequencer traces using phred. II. Error probabilities

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Arabidopsis RRS1-R disease resistance gene--uncovering the plant's nucleus as the new battlefield of plant defense?

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Fine Mapping and Identification of Nucleotide Binding Site/Leucine-Rich Repeat Sequences at the MER Locus in Populus deltoides 'S9-2'.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Plant transposable elements: where genetics meets genomics

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A resistance gene product of the nucleotide binding site -- leucine rich repeats class can form a complex with bacterial avirulence proteins in vivo.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

InterPro--an integrated documentation resource for protein families, domains and functional sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

High throughput direct end sequencing of BAC clones

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A gene encoding phosphatidylinositol-4-phosphate 5-kinase is induced by water stress and abscisic acid in Arabidopsis thaliana

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gene discovery in the wood-forming tissues of poplar: analysis of 5, 692 expressed sequence tags.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA sequencing with chain-terminating inhibitors

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

copia-like retrotransposons are ubiquitous among plants

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure, function and evolution of plant disease resistance genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Basic local alignment search tool

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Arabidopsis downy mildew resistance gene RPP5 shares similarity to the toll and interleukin-1 receptors with N and L6.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Psl: a novel Spm-like transposable element from Petunia hybrida

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Maize transposable elements

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Plant Disease Resistance Genes: Function Meets Structure

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Survey of transposable elements from rice genomic sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Interpolated Markov models for eukaryotic gene finding.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of 1.9 Mb of contiguous sequence from chromosome 4 ofArabidopsis thaliana

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Host resistance to infection: genetic control of lipopolysaccharide responsiveness by TOLL-like receptor genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Unravelling cell wall formation in the woody dicot stem

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sentinels of disease. Plant resistance genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

GeneMark.hmm: new solutions for gene finding

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolution of the rice Xa21 disease resistance gene family

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Artemis: sequence visualization and annotation

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A Single Gene Cluster Controls Incompatibility and Partial Resistance to Various Melampsora larici-populina Races in Hybrid Poplars

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

REPuter: fast computation of maximal repeats in complete genomes.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ab initio gene finding in Drosophila genomic DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

EST_GENOME: a program to align spliced DNA sequences to unspliced genomic DNA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Diversity, distribution, and ancient taxonomic relationships within the TIR and non-TIR NBS-LRR resistance gene subfamilies

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Retrotransposons in the flanking regions of normal plant genes: a role for copia-like elements in the evolution of gene structure and expression

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Plant retrotransposons

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Excision of the En/Spm transposable element of Zea mays requires two element-encoded proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Inactivation of the flax rust resistance gene M associated with loss of a repeated unit within the leucine-rich repeat coding region

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure and expression of duplicate AGAMOUS orthologues in poplar

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The product of the tobacco mosaic virus resistance gene N: similarity to toll and the interleukin-1 receptor

1 reference

https://pubmed.ncbi.nlm.nih.gov/15085260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S00122-004-1621-0

1 reference

Europe PubMed Central

PubMed publication ID

18 February 2018

http://europepmc.org/abstract/MED/15085260

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

18 February 2018

http://europepmc.org/abstract/MED/15085260

ResearchGate publication ID

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