When are pathogen genome sequences informative of transmission events? (Q50114269)

http://europepmc.org/abstract/PMC/5821398

6 March 2018

title

When are pathogen genome sequences informative of transmission events? (English)

1 reference

http://europepmc.org/abstract/PMC/5821398

6 March 2018

author

Finlay Campbell

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29420641%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Camilla Strang

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29420641%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Anne Cori

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29420641%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

3

Neil Ferguson

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29420641%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

author name string

Thibaut Jombart

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29420641%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

publication date

8 February 2018

1 reference

http://europepmc.org/abstract/PMC/5821398

6 March 2018

published in

PLOS Pathogens

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29420641%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

volume

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29420641%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

issue

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29420641%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

page(s)

e1006885

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29420641%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

2 June 2020

copyright license

start time

8 February 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

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22 May 2018

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Molecular epidemiology of hospital-associated and community-acquired Clostridium difficile infection in a Swedish county

22 May 2018

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22 May 2018

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Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance

22 May 2018

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Factors associated with antimicrobial resistance among clinical isolates of Klebsiella pneumoniae: 1-year survey in a French university hospital

22 May 2018

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The interval between successive cases of an infectious disease

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Comparative full-length genome sequence analysis of 14 SARS coronavirus isolates and common mutations associated with putative origins of infection

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22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5821398

Transmission intensity and impact of control policies on the foot and mouth epidemic in Great Britain

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5821398

Complete Genome Sequence of a Virulent Isolate of Streptococcus pneumoniae

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5821398

Criteria for the control of drug-resistant tuberculosis

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5821398

Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5821398

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5821398

A Bayesian approach for inferring the dynamics of partially observed endemic infectious diseases from space-time-genetic data.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5821398

Genome Sequence of Klebsiella pneumoniae Ecl8, a Reference Strain for Targeted Genetic Manipulation

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5821398

Risk of secondary cases of Clostridium difficile infection among household contacts of index cases.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5821398

Epidemiology and control of influenza A(H1N1)v in the Netherlands: the first 115 cases.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5821398

Integrating genetic and epidemiological data to determine transmission pathways of foot-and-mouth disease virus.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5821398

Effect of subinhibitory concentrations of antibiotics on mutation frequency in Streptococcus pneumoniae

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5821398

First outbreak of multidrug-resistant Klebsiella pneumoniae carrying blaVIM-1 and blaSHV-5 in a French university hospital

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5821398

[The genome comparison of SARS-CoV and other coronaviruses].

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5821398

Halting a pneumococcal pneumonia outbreak among United States Marine Corps trainees

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5821398

Transmission dynamics of the etiological agent of SARS in Hong Kong: impact of public health interventions

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5821398

A simultaneous outbreak on a neonatal unit of two strains of multiply antibiotic resistant Klebsiella pneumoniae controllable only by ward closure.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5821398

Estimation of serial interval and incubation period of tuberculosis using DNA fingerprinting.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5821398

Unravelling transmission trees of infectious diseases by combining genetic and epidemiological data

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5821398

Shigellosis outbreak associated with swimming

2 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29420641

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Outbreak of Streptococcus pneumoniae serotype 3 pneumonia in extremely elderly people in a nursing home unit in Kanagawa, Japan, 2013

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29420641

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PPAT.1006885

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29420641%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29420641%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

PubMed publication ID

29420641

1 reference