Brownian dynamics simulations on CPU and GPU with BD_BOX. (Q51006180)

26 March 2018

title

Brownian dynamics simulations on CPU and GPU with BD_BOX. (English)

1 reference

26 March 2018

3

Joanna Trylska

1 reference

26 March 2018

Maciej Długosz

1

0 references

author name string

Paweł Zieliński

series ordinal

2

1 reference

26 March 2018

publication date

2 June 2011

1 reference

26 March 2018

Journal of Computational Chemistry

published in

1 reference

26 March 2018

volume

32

1 reference

26 March 2018

issue

12

1 reference

26 March 2018

page(s)

2734-2744

1 reference

26 March 2018

Brownian dynamics simulation of protein-protein diffusional encounter

cites work

1 reference

Association of aminoglycosidic antibiotics with the ribosomal A-site studied with Brownian dynamics

21 January 2018

1 reference

A multiscale scheme for the simulation of conformational and solution properties of different dendrimer molecules

21 January 2018

1 reference

Internal motion of supercoiled DNA: brownian dynamics simulations of site juxtaposition.

21 January 2018

1 reference

Brownian dynamics simulations of supercoiled DNA with bent sequences

21 January 2018

1 reference

SIMUFLEX: Algorithms and Tools for Simulation of the Conformation and Dynamics of Flexible Molecules and Nanoparticles in Dilute Solution.

21 January 2018

1 reference

Browndye: A Software Package for Brownian Dynamics

21 January 2018

1 reference

Crowding effects on diffusion in solutions and cells

21 January 2018

1 reference

Effects of macromolecular crowding on intracellular diffusion from a single particle perspective.

21 January 2018

1 reference

Models of macromolecular crowding effects and the need for quantitative comparisons with experiment

21 January 2018

1 reference

Crowding and hydrodynamic interactions likely dominate in vivo macromolecular motion

21 January 2018

1 reference

Diffusion, crowding & protein stability in a dynamic molecular model of the bacterial cytoplasm

21 January 2018

1 reference

Diffusion in crowded biological environments: applications of Brownian dynamics

21 January 2018

1 reference

The influence of macromolecular crowding on HIV-1 protease internal dynamics

21 January 2018

1 reference

Coarse-grained models for proteins

21 January 2018

1 reference

Multiscale methods for macromolecular simulations.

21 January 2018

1 reference

Multiscale modeling of proteins

21 January 2018

1 reference

Stability and dynamics of virus capsids described by coarse-grained modeling

21 January 2018

1 reference

Crystallographic snapshots along a protein-induced DNA-bending pathway

21 January 2018

1 reference

VMD: visual molecular dynamics

21 January 2018

1 reference

Calculation of hydrodynamic properties of globular proteins from their atomic-level structure

21 January 2018

1 reference

Hydrodynamic properties of rigid particles: comparison of different modeling and computational procedures

21 January 2018

1 reference

Dynamic electro-optic properties of macromolecules and nanoparticles in solution: a review of computational and simulation methodologies.

21 January 2018

1 reference

Toward realistic modeling of dynamic processes in cell signaling: quantification of macromolecular crowding effects.

21 January 2018

1 reference

Absolute protein-protein association rate constants from flexible, coarse-grained Brownian dynamics simulations: the role of intermolecular hydrodynamic interactions in barnase-barstar association

21 January 2018

1 reference

Computer simulations of diffusion and dynamics of short-chain polyelectrolytes.

21 January 2018

1 reference

An O(N2) approximation for hydrodynamic interactions in Brownian dynamics simulations.

21 January 2018

1 reference

Refinement of the three-dimensional solution structure of barley serine proteinase inhibitor 2 and comparison with the structures in crystals

21 January 2018

1 reference

Effects of proteins on protein diffusion.

21 January 2018

1 reference

Mersenne twister: a 623-dimensionally equidistributed uniform pseudo-random number generator

21 January 2018

1 reference

A Note on the Generation of Random Normal Deviates

21 January 2018

1 reference

On the Contributions of Diffusion and Thermal Activation to Electron Transfer betweenPhormidium laminosumPlastocyanin and Cytochromef: Brownian Dynamics Simulations with Explicit Modeling of Nonpolar Desolvation Interactions and Electron Transfer Eve

21 January 2018

1 reference

Electrostatics and diffusion of molecules in solution: simulations with the University of Houston Brownian Dynamics program

21 January 2018

1 reference

Flap opening dynamics in HIV-1 protease explored with a coarse-grained model

21 January 2018

1 reference

Brownian dynamics with rotation–translation coupling

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1002/JCC.21847

1 reference

26 March 2018

DBLP publication ID

journals/jcc/DlugoszZT11

1 reference

DBLP Dataset 2021-01-02

release_zyz4snbqjfgv7njcnwgvxzw54y

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/zyz4snbqjfgv7njcnwgvxzw54y

mapped directly with Wikidata item

24 November 2022

based on heuristic

PubMed ID

21638295

1 reference

26 March 2018