Complete proteomic-based enzyme reaction and inhibition kinetics reveal how monolignol biosynthetic enzyme families affect metabolic flux and lignin in Populus trichocarpa (Q51102639)

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scientific article published on 11 March 2014

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English	Complete proteomic-based enzyme reaction and inhibition kinetics reveal how monolignol biosynthetic enzyme families affect metabolic flux and lignin in Populus trichocarpa	scientific article published on 11 March 2014

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scholarly article

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PubMed publication ID

29 March 2018

http://europepmc.org/abstract/MED/24619611

Complete proteomic-based enzyme reaction and inhibition kinetics reveal how monolignol biosynthetic enzyme families affect metabolic flux and lignin in Populus trichocarpa (English)

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Europe PubMed Central

PubMed publication ID

29 March 2018

http://europepmc.org/abstract/MED/24619611

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Populus trichocarpa

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Populus trichocarpa

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9 June 2020

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9 June 2020

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9 June 2020

Ronald R Sederoff

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Ronald R Sederoff

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9 June 2020

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Punith P Naik

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9 June 2020

Hsi-Chuan Chen

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9 June 2020

Rui Shi

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9 June 2020

Chien-Yuan Lin

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9 June 2020

Jie Liu

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9 June 2020

Christopher M Shuford

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9 June 2020

Quanzi Li

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9 June 2020

Sermsawat Tunlaya-Anukit

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9 June 2020

Cranos M Williams

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9 June 2020

David C Muddiman

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9 June 2020

Vincent L Chiang

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9 June 2020

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11 March 2014

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29 March 2018

http://europepmc.org/abstract/MED/24619611

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9 June 2020

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9 June 2020

3

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9 June 2020

894-914

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9 June 2020

SND1 transcription factor-directed quantitative functional hierarchical genetic regulatory network in wood formation in Populus trichocarpa.

1 reference

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25 August 2018

Caffeoyl shikimate esterase (CSE) is an enzyme in the lignin biosynthetic pathway in Arabidopsis

1 reference

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Regulation of phenylalanine ammonia-lyase (PAL) gene family in wood forming tissue of Populus trichocarpa

1 reference

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Ptr-miR397a is a negative regulator of laccase genes affecting lignin content in Populus trichocarpa

1 reference

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Monolignol pathway 4-coumaric acid:coenzyme A ligases in Populus trichocarpa: novel specificity, metabolic regulation, and simulation of coenzyme A ligation fluxes

1 reference

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Functional analysis of metabolic channeling and regulation in lignin biosynthesis: a computational approach

1 reference

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25 August 2018

A standard reaction condition and a single HPLC separation system are sufficient for estimation of monolignol biosynthetic pathway enzyme activities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4001400

25 August 2018

Functional redundancy of the two 5-hydroxylases in monolignol biosynthesis of Populus trichocarpa: LC-MS/MS based protein quantification and metabolic flux analysis.

1 reference

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25 August 2018

Comprehensive quantification of monolignol-pathway enzymes in Populus trichocarpa by protein cleavage isotope dilution mass spectrometry

1 reference

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25 August 2018

Insights into metabolic efficiency from flux analysis

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Fluxes in central carbohydrate metabolism of source leaves in a fructan-storing C3 grass: rapid turnover and futile cycling of sucrose in continuous light under contrasted nitrogen nutrition status.

1 reference

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25 August 2018

Membrane protein complexes catalyze both 4- and 3-hydroxylation of cinnamic acid derivatives in monolignol biosynthesis

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Identification and analysis of phosphorylation status of proteins in dormant terminal buds of poplar

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Silencing of 4-coumarate:coenzyme A ligase in switchgrass leads to reduced lignin content and improved fermentable sugar yields for biofuel production

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25 August 2018

Integrative analysis of transgenic alfalfa (Medicago sativa L.) suggests new metabolic control mechanisms for monolignol biosynthesis

1 reference

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Characterization of a cinnamoyl-CoA reductase 1 (CCR1) mutant in maize: effects on lignification, fibre development, and global gene expression

1 reference

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High-throughput SNP genotyping in the highly heterozygous genome of Eucalyptus: assay success, polymorphism and transferability across species

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CCoAOMT suppression modifies lignin composition in Pinus radiata.

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25 August 2018

Functional analyses of caffeic acid O-Methyltransferase and Cinnamoyl-CoA-reductase genes from perennial ryegrass (Lolium perenne).

1 reference

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Lignin and biomass: a negative correlation for wood formation and lignin content in trees

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25 August 2018

Ultrastructure and mechanical properties of populus wood with reduced lignin content caused by transgenic down-regulation of cinnamate 4-hydroxylase

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25 August 2018

Mathematical modeling of monolignol biosynthesis in Populus xylem

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25 August 2018

Antisense down-regulation of 4CL expression alters lignification, tree growth, and saccharification potential of field-grown poplar

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25 August 2018

Tyloses and phenolic deposits in xylem vessels impede water transport in low-lignin transgenic poplars: a study by cryo-fluorescence microscopy

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A genome-scale metabolic model accurately predicts fluxes in central carbon metabolism under stress conditions.

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25 August 2018

Modeling lignin polymerization. I. Simulation model of dehydrogenation polymers.

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25 August 2018

Towards a systems approach for lignin biosynthesis in Populus trichocarpa: transcript abundance and specificity of the monolignol biosynthetic genes.

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25 August 2018

Mutations in the cinnamate 4-hydroxylase gene impact metabolism, growth and development in Arabidopsis

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Suppression of 4-coumarate-CoA ligase in the coniferous gymnosperm Pinus radiata

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RNAi-mediated suppression of p-coumaroyl-CoA 3'-hydroxylase in hybrid poplar impacts lignin deposition and soluble secondary metabolism.

1 reference

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Lignin modification improves fermentable sugar yields for biofuel production

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Including metabolite concentrations into flux balance analysis: thermodynamic realizability as a constraint on flux distributions in metabolic networks

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Introduction of sense constructs of cinnamate 4-hydroxylase (CYP73A24) in transgenic tomato plants shows opposite effects on flux into stem lignin and fruit flavonoids

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His-tag impact on structure

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The path forward for biofuels and biomaterials

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Targeted down-regulation of cytochrome P450 enzymes for forage quality improvement in alfalfa (Medicago sativa L.).

1 reference

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25 August 2018

Clarification of cinnamoyl co-enzyme A reductase catalysis in monolignol biosynthesis of Aspen

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Silencing of hydroxycinnamoyl-coenzyme A shikimate/quinate hydroxycinnamoyltransferase affects phenylpropanoid biosynthesis

1 reference

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25 August 2018

Genome-wide characterization of the lignification toolbox in Arabidopsis

1 reference

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1 reference

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25 August 2018

Lignin biosynthesis

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Expression pattern of two paralogs encoding cinnamyl alcohol dehydrogenases in Arabidopsis. Isolation and characterization of the corresponding mutants

1 reference

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1 reference

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Efficiency of Lignin Biosynthesis: a Quantitative Analysis

1 reference

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1 reference

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1 reference

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1 reference

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Unexpected variation in lignin

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25 August 2018

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25 August 2018

Lignin monomer composition is determined by the expression of a cytochrome P450-dependent monooxygenase in Arabidopsis.

1 reference

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25 August 2018

Alterations in the biosynthesis of lignin in transgenic plants with chimeric genes for 4-coumarate: coenzyme A ligase

1 reference

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25 August 2018

Quantitative relationship between phenylalanine ammonia-lyase levels and phenylpropanoid accumulation in transgenic tobacco identifies a rate-determining step in natural product synthesis

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25 August 2018

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25 August 2018

Dual methylation pathways in lignin biosynthesis

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Both caffeoyl Coenzyme A 3-O-methyltransferase 1 and caffeic acid O-methyltransferase 1 are involved in redundant functions for lignin, flavonoids and sinapoyl malate biosynthesis in Arabidopsis

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RNAi-mediated suppression of the phenylalanine ammonia-lyase gene in Salvia miltiorrhiza causes abnormal phenotypes and a reduction in rosmarinic acid biosynthesis

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https://pubmed.ncbi.nlm.nih.gov/24619611

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Antisense suppression of 4-coumarate:coenzyme A ligase activity in Arabidopsis leads to altered lignin subunit composition

1 reference

https://pubmed.ncbi.nlm.nih.gov/24619611

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Down-regulation of lignin biosynthesis in transgenic Leucaena leucocephala harboring O-methyltransferase gene

1 reference

https://pubmed.ncbi.nlm.nih.gov/24619611

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Abnormal lignin in a loblolly pine mutant

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https://pubmed.ncbi.nlm.nih.gov/24619611

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chemistry of Lignification: Biochemical research on lignins is yielding clues to the structure and formation of these complex polymers

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12 December 2020

based on heuristic

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Modification of lignin biosynthesis in transgenic Nicotiana through expression of an antisense O-methyltransferase gene from Populus

1 reference

https://pubmed.ncbi.nlm.nih.gov/24619611

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based on heuristic

inferred from PubMed ID database lookup

Simulating plant metabolic pathways with enzyme-kinetic models

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based on heuristic

inferred from PubMed ID database lookup

From rags to riches

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based on heuristic

inferred from PubMed ID database lookup

Studies of lignin biosynthesis using isotopic carbon. XIII. The phenylpropanoid system in lignification

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https://pubmed.ncbi.nlm.nih.gov/24619611

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based on heuristic

inferred from PubMed ID database lookup

Studies of lignin biosynthesis using isotopic carbon. VI. Formation of the side chain of the phenylpropane monomer

1 reference

https://pubmed.ncbi.nlm.nih.gov/24619611

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Essential role of caffeoyl coenzyme A O-methyltransferase in lignin biosynthesis in woody poplar plants

1 reference

https://pubmed.ncbi.nlm.nih.gov/24619611

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Renewable resources for the production of fuels and chemicals

1 reference

https://pubmed.ncbi.nlm.nih.gov/24619611

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Stress Responses in Alfalfa (Medicago sativa L.): II. Purification, Characterization, and Induction of Phenylalanine Ammonia-Lyase Isoforms from Elicitor-Treated Cell Suspension Cultures

1 reference

https://pubmed.ncbi.nlm.nih.gov/24619611

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Computational analysis of storage synthesis in developing Brassica napus L. (oilseed rape) embryos: flux variability analysis in relation to ¹³C metabolic flux analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/24619611

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Reduced Lignin Content and Altered Lignin Composition in Transgenic Tobacco Down-Regulated in Expression of L-Phenylalanine Ammonia-Lyase or Cinnamate 4-Hydroxylase

1 reference

https://pubmed.ncbi.nlm.nih.gov/24619611

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Repression of lignin biosynthesis promotes cellulose accumulation and growth in transgenic trees

1 reference

https://pubmed.ncbi.nlm.nih.gov/24619611

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Suppression of O-methyltransferase gene by homologous sense transgene in quaking aspen causes red-brown wood phenotypes

1 reference

https://pubmed.ncbi.nlm.nih.gov/24619611

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Down-regulation of hydroxycinnamoyl CoA: shikimate hydroxycinnamoyl transferase in transgenic alfalfa affects lignification, development and forage quality

1 reference

https://pubmed.ncbi.nlm.nih.gov/24619611

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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