Direct-geneFISH: a simplified protocol for the simultaneous detection and quantification of genes and rRNA in microorganisms. (Q51282030)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27348074%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

title

Direct-geneFISH: a simplified protocol for the simultaneous detection and quantification of genes and rRNA in microorganisms (English)

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16 March 2020

author name string

Jimena Barrero-Canosa

series ordinal

1

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16 March 2020

Cristina Moraru

series ordinal

2

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16 March 2020

Laura Zeugner

series ordinal

3

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16 March 2020

publication date

18 July 2016

1 reference

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Environmental Microbiology

16 March 2020

published in

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16 March 2020

volume

19

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issue

1

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16 March 2020

page(s)

70-82

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Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes

16 March 2020

cites work

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

Single-cell and population level viral infection dynamics revealed by phageFISH, a method to visualize intracellular and free viruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

Denitrification likely catalyzed by endobionts in an allogromiid foraminifer

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

Super-resolution imaging in live Caulobacter crescentus cells using photoswitchable EYFP.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

Spatial organization of transcription machinery and its segregation from the replisome in fast-growing bacterial cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

mRNA-targeted fluorescent in situ hybridization (FISH) of Gram-negative bacteria without template amplification or tyramide signal amplification

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

A branched DNA signal amplification assay for quantification of nucleic acid targets below 100 molecules/ml

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

Superresolution microscopy for microbiology

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

Spatially resolved transcriptomics and beyond.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

Variably lytic infection dynamics of large Bacteroidetes podovirus phi38:1 against two Cellulophaga baltica host strains

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

FunGene: the functional gene pipeline and repository

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

In vivo structure of the E. coli FtsZ-ring revealed by photoactivated localization microscopy (PALM)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

Marine microbial community dynamics and their ecological interpretation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

Exploring bacterial cell biology with single-molecule tracking and super-resolution imaging

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

Dynamic Escherichia coli SeqA complexes organize the newly replicated DNA at a considerable distance from the replisome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

High throughput 3D super-resolution microscopy reveals Caulobacter crescentus in vivo Z-ring organization.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

Direct detection by in situ PCR of the amoA gene in biofilm resulting from a nitrogen removal process

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

Isolating "uncultivable" microorganisms in pure culture in a simulated natural environment

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

Roseobacter clade bacteria are abundant in coastal sediments and encode a novel combination of sulfur oxidation genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

Across bacterial phyla, distantly-related genomes with similar genomic GC content have similar patterns of amino acid usage

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

Noise in gene expression determines cell fate in Bacillus subtilis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

Visualization and enumeration of bacteria carrying a specific gene sequence by in situ rolling circle amplification

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

Quantitative determination of free-DNA uptake in river bacteria at the single-cell level by in situ rolling-circle amplification

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

GeneCARD-FISH: detection of tceA and vcrA reductive dehalogenase genes in Dehalococcoides mccartyi by fluorescence in situ hybridization

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

Spatial organization of the flow of genetic information in bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

GeneFISH--an in situ technique for linking gene presence and cell identity in environmental microorganisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

Concepts and software for a rational design of polynucleotide probes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

Subcellular distribution of actively partitioning F plasmid during the cell division cycle in E. coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

Alexa dyes, a series of new fluorescent dyes that yield exceptionally bright, photostable conjugates

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

Hydrogen is an energy source for hydrothermal vent symbioses

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

Community shift from phototrophic to chemotrophic sulfide oxidation following anoxic holomixis in a stratified seawater lake.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

A spindle-like apparatus guides bacterial chromosome segregation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

Environmental genomics, the big picture?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

Measuring mRNA copy number in individual Escherichia coli cells using single-molecule fluorescent in situ hybridization

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

Massively parallel sequencing of single cells by epicPCR links functional genes with phylogenetic markers

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

High-resolution single-copy gene fluorescence in situ hybridization and its use in the construction of a cytogenetic map of maize chromosome 9.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

DNA probes: applications of the principles of nucleic acid hybridization

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

Conditionally amplifiable BACs: switching from single-copy to high-copy vectors and genomic clones

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

In situ DNA-hybridization chain reaction (HCR): a facilitated in situ HCR system for the detection of environmental microorganisms.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13432

21 January 2018

Identifiers

DOI

10.1111/1462-2920.13432

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27348074%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

1 reference