Batch effects in the BRLMM genotype calling algorithm influence GWAS results for the Affymetrix 500K array. (Q51674627)

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9 February 2020

title

Batch effects in the BRLMM genotype calling algorithm influence GWAS results for the Affymetrix 500K array (English)

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genome-wide association study

9 February 2020

main subject

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4

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9 February 2020

Cesare Furlanello

5

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9 February 2020

Christophe G. Lambert

6

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author name string

K Miclaus

1

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9 February 2020

R Wolfinger

2

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S Vega

3

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H Hong

7

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9 February 2020

Li Zhang

8

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S Yin

9

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F Goodsaid

10

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publication date

1 August 2010

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The Pharmacogenomics Journal

9 February 2020

published in

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volume

10

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issue

4

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page(s)

336-346

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Genome-wide association studies: progress and potential for drug discovery and development

9 February 2020

cites work

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https://api.crossref.org/works/10.1038%2FTPJ.2010.36

Progress and challenges in genome-wide association studies in humans

21 January 2018

1 reference

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Population structure, differential bias and genomic control in a large-scale, case-control association study

21 January 2018

1 reference

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Dynamic model based algorithms for screening and genotyping over 100 K SNPs on oligonucleotide microarrays

21 January 2018

1 reference

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Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FTPJ.2010.36

Validation and extension of an empirical Bayes method for SNP calling on Affymetrix microarrays

21 January 2018

1 reference

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Genome-wide association study of restless legs syndrome identifies common variants in three genomic regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FTPJ.2010.36

A genome-wide association study identifies three loci associated with mean platelet volume

21 January 2018

1 reference

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Genome-wide association study provides evidence for a breast cancer risk locus at 6q22.33.

21 January 2018

1 reference

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A method to address differential bias in genotyping in large-scale association studies

21 January 2018

1 reference

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Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FTPJ.2010.36

Appropriate data cleaning methods for genome-wide association study

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FTPJ.2010.36

Non-random error in genotype calling procedures: implications for family-based and case-control genome-wide association studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FTPJ.2010.36

Quantifying uncertainty in genotype calls

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FTPJ.2010.36

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FTPJ.2010.36

21 January 2018

Identifiers

DOI

10.1038/TPJ.2010.36

1 reference

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9 February 2020

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