Conserved Noncoding Sequences among Cultivated Cereal Genomes Identify Candidate Regulatory Sequence Elements and Patterns of Promoter Evolution[W] (Q52017405)

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scientific article published on May 1, 2003

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English	Conserved Noncoding Sequences among Cultivated Cereal Genomes Identify Candidate Regulatory Sequence Elements and Patterns of Promoter Evolution[W]	scientific article published on May 1, 2003

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scholarly article

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Europe PubMed Central

PubMed publication ID

19 April 2018

http://europepmc.org/abstract/MED/12724540

Conserved Noncoding Sequences among Cultivated Cereal Genomes Identify Candidate Regulatory Sequence Elements and Patterns of Promoter Evolution[W] (English)

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most precise value

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10.1105/TPC.010181

https://api.crossref.org/works/10.1105/TPC.010181

29 December 2023

Conserved noncoding sequences among cultivated cereal genomes identify candidate regulatory sequence elements and patterns of promoter evolution (English)

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PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12724540

29 December 2023

1 reference

10.1105/TPC.010181

https://api.crossref.org/works/10.1105/TPC.010181

29 December 2023

author name string

Hena Guo

1

1 reference

Europe PubMed Central

PubMed publication ID

19 April 2018

http://europepmc.org/abstract/MED/12724540

Stephen P. Moose

2

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Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12724540

29 December 2023

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1 May 2003

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Europe PubMed Central

PubMed publication ID

19 April 2018

http://europepmc.org/abstract/MED/12724540

full work available at URL

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Europe PubMed Central

PubMed publication ID

19 April 2018

http://europepmc.org/abstract/MED/12724540

15

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Europe PubMed Central

PubMed publication ID

19 April 2018

http://europepmc.org/abstract/MED/12724540

5

1 reference

Europe PubMed Central

PubMed publication ID

19 April 2018

http://europepmc.org/abstract/MED/12724540

1143-1158

1 reference

Europe PubMed Central

PubMed publication ID

19 April 2018

http://europepmc.org/abstract/MED/12724540

DNA sequences required for anaerobic expression of the maize alcohol dehydrogenase 1 gene.

1 reference

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A significant fraction of conserved noncoding DNA in human and mouse consists of predicted matrix attachment regions

1 reference

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25 August 2018

Phylogenetic shadowing of primate sequences to find functional regions of the human genome

1 reference

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25 August 2018

Cross-species sequence comparisons: a review of methods and available resources

1 reference

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Comparative sequence analysis of the sorghum Rph region and the maize Rp1 resistance gene complex

1 reference

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25 August 2018

Targeted analysis of orthologous phytochrome A regions of the sorghum, maize, and rice genomes using comparative gene-island sequencing

1 reference

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Obtaining the sequence of the rice genome and lessons learned along the way.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Different types and rates of genome evolution detected by comparative sequence analysis of orthologous segments from four cereal genomes

1 reference

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Mosaic organization of orthologous sequences in grass genomes

1 reference

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25 August 2018

Factors influencing the identification of transcription factor binding sites by cross-species comparison.

1 reference

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25 August 2018

Rice as a model for comparative genomics of plants

1 reference

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Maize DRE-binding proteins DBF1 and DBF2 are involved in rab17 regulation through the drought-responsive element in an ABA-dependent pathway

1 reference

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Utility and distribution of conserved noncoding sequences in the grasses

1 reference

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A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)

1 reference

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25 August 2018

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

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PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences.

1 reference

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The Eukaryotic Promoter Database, EPD: new entry types and links to gene expression data

1 reference

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25 August 2018

Enrichment of regulatory signals in conserved non-coding genomic sequence

1 reference

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25 August 2018

Comparative genomics and regulatory evolution: conservation and function of the Chs and Apetala3 promoters

1 reference

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Analysis of conserved noncoding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences.

1 reference

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25 August 2018

The search for meaning in noncoding DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

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Surveying Saccharomyces genomes to identify functional elements by comparative DNA sequence analysis.

1 reference

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Arabidopsis and Brassica comparative genomics: sequence, structure and gene content in the ABI-Rps2-Ck1 chromosomal segment and related regions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

VISTA : visualizing global DNA sequence alignments of arbitrary length

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

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Characterization of an iron-dependent regulatory sequence involved in the transcriptional control of AtFer1 and ZmFer1 plant ferritin genes by iron

1 reference

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DNA sequence evidence for the segmental allotetraploid origin of maize

1 reference

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25 August 2018

Active conservation of noncoding sequences revealed by three-way species comparisons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

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Comparative sequence analysis of plant nuclear genomes:m microcolinearity and its many exceptions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Genome relationships: the grass model in current research

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Cis-elements and trans-factors that regulate expression of the maize Cat1 antioxidant gene in response to ABA and osmotic stress: H2O2 is the likely intermediary signaling molecule for the response

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

PipMaker--a web server for aligning two genomic DNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Identification of a Coordinate Regulator of Interleukins 4, 13, and 5 by Cross-Species Sequence Comparisons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

The complete sequence of 340 kb of DNA around the rice Adh1-adh2 region reveals interrupted colinearity with maize chromosome 4.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Constitutive protein-DNA interactions on the abscisic acid-responsive element before and after developmental activation of the rab28 gene.

1 reference

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Comparative analysis of noncoding regions of 77 orthologous mouse and human gene pairs

1 reference

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Identification of cis-acting elements important for expression of the starch-branching enzyme I gene in maize endosperm

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Colinearity and its exceptions in orthologous adh regions of maize and sorghum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

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DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment

1 reference

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Functional genomics in Caenorhabditis elegans: An approach involving comparisons of sequences from related nematodes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

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Activation of the maize anthocyanin gene a2 is mediated by an element conserved in many anthocyanin promoters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Bayesian adaptive sequence alignment algorithms.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

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Sequence organization and conservation in sh2/a1-homologous regions of sorghum and rice.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

The G-box: a ubiquitous regulatory DNA element in plants bound by the GBF family of bZIP proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

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Promoter elements required for developmental expression of the maize Adh1 gene in transgenic rice.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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Evolutionary History of the Grasses

1 reference

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1 reference

https://pubmed.ncbi.nlm.nih.gov/12724540

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1 reference

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Using cauliflower to find conserved non-coding regions in Arabidopsis

1 reference

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Molecular identification and isolation of the Waxy locus in maize

1 reference

https://pubmed.ncbi.nlm.nih.gov/12724540

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1 reference

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Identifiers

10.1105/TPC.010181

1 reference

Europe PubMed Central

PubMed publication ID

19 April 2018

http://europepmc.org/abstract/MED/12724540

PMC publication ID

0 references

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

19 April 2018

http://europepmc.org/abstract/MED/12724540

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