Genome-wide control of polyadenylation site choice by CPSF30 in Arabidopsis. (Q53135142)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23136375%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

title

Genome-wide control of polyadenylation site choice by CPSF30 in Arabidopsis (English)

1 reference

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17 February 2020

7

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17 February 2020

Xiaohui Wu

2

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17 February 2020

Qingshun Quinn Li

6

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17 February 2020

author name string

Patrick E Thomas

1

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17 February 2020

Man Liu

3

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17 February 2020

Bobby Gaffney

4

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17 February 2020

Guoli Ji

5

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17 February 2020

publication date

6 November 2012

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17 February 2020

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17 February 2020

volume

24

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17 February 2020

issue

11

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17 February 2020

page(s)

4376-4388

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Direct sequencing of Arabidopsis thaliana RNA reveals patterns of cleavage and polyadenylation.

17 February 2020

cites work

1 reference

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Alternative polyadenylation and gene expression regulation in plants.

7 September 2018

1 reference

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Genome-wide landscape of polyadenylation in Arabidopsis provides evidence for extensive alternative polyadenylation.

7 September 2018

1 reference

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Crosstalk between mRNA 3' end processing and transcription initiation

7 September 2018

1 reference

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A disulfide linkage in a CCCH zinc finger motif of an Arabidopsis CPSF30 ortholog.

7 September 2018

1 reference

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Gene-specific RNA polymerase II phosphorylation and the CTD code

7 September 2018

1 reference

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Crossing the borders: poly(A)-binding proteins working on both sides of the fence

7 September 2018

1 reference

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Revealing frequent alternative polyadenylation and widespread low-level transcription read-through of novel plant transcription terminators

7 September 2018

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Unique features of plant cleavage and polyadenylation specificity factor revealed by proteomic studies

7 September 2018

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An up-close look at the pre-mRNA 3'-end processing complex

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531840

Distinctive interactions of the Arabidopsis homolog of the 30 kD subunit of the cleavage and polyadenylation specificity factor (AtCPSF30) with other polyadenylation factor subunits

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531840

Messenger RNA 3' end formation in plants.

7 September 2018

1 reference

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A polyadenylation factor subunit implicated in regulating oxidative signaling in Arabidopsis thaliana.

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531840

Arabidopsis mRNA polyadenylation machinery: comprehensive analysis of protein-protein interactions and gene expression profiling

7 September 2018

1 reference

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Genome level analysis of rice mRNA 3'-end processing signals and alternative polyadenylation

7 September 2018

1 reference

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Redox and heavy metal effects on the biochemical activities of an Arabidopsis polyadenylation factor subunit.

7 September 2018

1 reference

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A novel endonuclease activity associated with the Arabidopsis ortholog of the 30-kDa subunit of cleavage and polyadenylation specificity factor.

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531840

The poly(A)-dependent transcriptional pause is mediated by CPSF acting on the body of the polymerase

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531840

Polyadenylation factor CPSF-73 is the pre-mRNA 3'-end-processing endonuclease

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531840

Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531840

Compilation of mRNA polyadenylation signals in Arabidopsis revealed a new signal element and potential secondary structures.

7 September 2018

1 reference

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Plant gene expression in the age of systems biology: integrating transcriptional and post-transcriptional events.

7 September 2018

1 reference

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Connections between mRNA 3' end processing and transcription termination

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531840

Rules of engagement: co-transcriptional recruitment of pre-mRNA processing factors

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531840

Evidence that polyadenylation factor CPSF-73 is the mRNA 3' processing endonuclease.

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531840

Organization and function of APT, a subcomplex of the yeast cleavage and polyadenylation factor involved in the formation of mRNA and small nucleolar RNA 3'-ends

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531840

Functional dissection of the zinc finger and flanking domains of the Yth1 cleavage/polyadenylation factor

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531840

A history of poly A sequences: from formation to factors to function

7 September 2018

1 reference

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The mRNA assembly line: transcription and processing machines in the same factory

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531840

Reverse transcriptase template switching: a SMART approach for full-length cDNA library construction

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531840

Fip1 regulates the activity of Poly(A) polymerase through multiple interactions

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531840

Distinct roles of two Yth1p domains in 3'-end cleavage and polyadenylation of yeast pre-mRNAs

7 September 2018

1 reference

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The WD-repeat protein pfs2p bridges two essential factors within the yeast pre-mRNA 3'-end-processing complex

7 September 2018

1 reference

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In silico detection of control signals: mRNA 3'-end-processing sequences in diverse species

7 September 2018

1 reference

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A multisubunit 3' end processing factor from yeast containing poly(A) polymerase and homologues of the subunits of mammalian cleavage and polyadenylation specificity factor

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531840

The 30-kD subunit of mammalian cleavage and polyadenylation specificity factor and its yeast homolog are RNA-binding zinc finger proteins

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531840

Cleavage of RNA hairpins mediated by a developmentally regulated CCCH zinc finger protein

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531840

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531840

The contribution of AAUAAA and the upstream element UUUGUA to the efficiency of mRNA 3'-end formation in plants

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531840

The 160-kD subunit of human cleavage-polyadenylation specificity factor coordinates pre-mRNA 3'-end formation

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531840

Upstream sequences other than AAUAAA are required for efficient messenger RNA 3'-end formation in plants

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531840

Characterization of the polyadenylation signal from the T-DNA-encoded octopine synthase gene

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531840

A dissection of the cauliflower mosaic virus polyadenylation signal

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531840

Several distinct types of sequence elements are required for efficient mRNA 3' end formation in a pea rbcS gene

7 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531840

A near-upstream element in a plant polyadenylation signal consists of more than six nucleotides

7 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23136375

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1105/TPC.112.096107

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23136375%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

PMC publication ID

3531840

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23136375%20AND%20SRC:MED&resulttype=core&format=json