Integrated analysis of transcriptome and lipid profiling reveals the co-influences of inositol-choline and Snf1 in controlling lipid biosynthesis in yeast. (Q54509131)

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English	Integrated analysis of transcriptome and lipid profiling reveals the co-influences of inositol-choline and Snf1 in controlling lipid biosynthesis in yeast.	scientific article

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scholarly article

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Europe PubMed Central

30 May 2018

http://europepmc.org/abstract/MED/22622761

Integrated analysis of transcriptome and lipid profiling reveals the co-influences of inositol-choline and Snf1 in controlling lipid biosynthesis in yeast. (English)

1 reference

Europe PubMed Central

30 May 2018

http://europepmc.org/abstract/MED/22622761

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Pramote Chumnanpuen

1

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Europe PubMed Central

30 May 2018

http://europepmc.org/abstract/MED/22622761

4

1 reference

Europe PubMed Central

30 May 2018

http://europepmc.org/abstract/MED/22622761

Intawat Nookaew

3

object named as

Intawat Nookaew

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Europe PubMed Central

30 May 2018

author name string

Jie Zhang

2

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Europe PubMed Central

30 May 2018

http://europepmc.org/abstract/MED/22622761

publication date

24 May 2012

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Europe PubMed Central

30 May 2018

http://europepmc.org/abstract/MED/22622761

Molecular Genetics and Genomics

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Europe PubMed Central

30 May 2018

http://europepmc.org/abstract/MED/22622761

287

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Europe PubMed Central

30 May 2018

http://europepmc.org/abstract/MED/22622761

7

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Europe PubMed Central

30 May 2018

http://europepmc.org/abstract/MED/22622761

541-554

1 reference

Europe PubMed Central

30 May 2018

http://europepmc.org/abstract/MED/22622761

https://scigraph.springernature.com/pub.10.1007/s00438-012-0697-5

0 references

YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

Glucose repression affects ion homeostasis in yeast through the regulation of the stress-activated ENA1 gene.

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

Gene ontology: tool for the unification of biology

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

The membrane-associated enzyme phosphatidylserine synthase is regulated at the level of mRNA abundance

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

Yeast genes GIS1-4: multicopy suppressors of the Gal- phenotype of snf1 mig1 srb8/10/11 cells.

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

A RAPID METHOD OF TOTAL LIPID EXTRACTION AND PURIFICATION

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

Role of the ubiquitin-selective CDC48(UFD1/NPL4 )chaperone (segregase) in ERAD of OLE1 and other substrates

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

Integrated multilaboratory systems biology reveals differences in protein metabolism between two reference yeast strains

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

Cloning and genetic mapping of SNF1, a gene required for expression of glucose-repressible genes in Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

Inositol induces a profound alteration in the pattern and rate of synthesis and turnover of membrane lipids in Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

Functional organization of the yeast proteome by systematic analysis of protein complexes

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

Characterization of a yeast regulatory mutant constitutive for synthesis of inositol-1-phosphate synthase.

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

The biochemistry of peroxisomal beta-oxidation in the yeast Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

The yeast UME6 gene is required for both negative and positive transcriptional regulation of phospholipid biosynthetic gene expression

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

Genome-wide analysis reveals inositol, not choline, as the major effector of Ino2p-Ino4p and unfolded protein response target gene expression in yeast

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

A regulatory shortcut between the Snf1 protein kinase and RNA polymerase II holoenzyme

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

Snf1 protein kinase and the repressors Nrg1 and Nrg2 regulate FLO11, haploid invasive growth, and diploid pseudohyphal differentiation

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

Dimerization of yeast transcription factors Ino2 and Ino4 is regulated by precursors of phospholipid biosynthesis mediated by Opi1 repressor

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

Sip2, an N-myristoylated beta subunit of Snf1 kinase, regulates aging in Saccharomyces cerevisiae by affecting cellular histone kinase activity, recombination at rDNA loci, and silencing

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

Snf1p regulates Gcn5p transcriptional activity by antagonizing Spt3p

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

Snf1--a histone kinase that works in concert with the histone acetyltransferase Gcn5 to regulate transcription.

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

Histone H3 phosphorylation can promote TBP recruitment through distinct promoter-specific mechanisms

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

Phospholipid metabolism regulated by a transcription factor sensing phosphatidic acid.

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

A conserved ER targeting motif in three families of lipid binding proteins and in Opi1p binds VAP

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

Interaction oftransandcisregulatory elements in theINO1promoter ofSaccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

Yeast Pak1 Kinase Associates with and Activates Snf1

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

Systems biology of lipid metabolism: from yeast to human

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

The genome-scale metabolic model iIN800 of Saccharomyces cerevisiae and its validation: a scaffold to query lipid metabolism

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

Architecture of transcriptional regulatory circuits is knitted over the topology of bio-molecular interaction networks

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

Uncovering transcriptional regulation of metabolism by using metabolic network topology

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

A role for the non-phosphorylated form of yeast Snf1: tolerance to toxic cations and activation of potassium transport

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

Snf1 dependence of peroxisomal gene expression is mediated by Adr1

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

Genome expression analysis in yeast reveals novel transcriptional regulation by inositol and choline and new regulatory functions for Opi1p, Ino2p, and Ino4p

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

Yeast transcriptional activator INO2 interacts as an Ino2p/Ino4p basic helix-loop-helix heteromeric complex with the inositol/choline-responsive element necessary for expression of phospholipid biosynthetic genes in Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

A chemical genomics study identifies Snf1 as a repressor of GCN4 translation

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

Inhibition of acetyl coenzyme A carboxylase activity restores expression of the INO1 gene in a snf1 mutant strain of Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

Regulation of gluconeogenesis in Saccharomyces cerevisiae is mediated by activator and repressor functions of Rds2.

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

The BioGRID Interaction Database: 2011 update

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

Elm1p is one of three upstream kinases for the Saccharomyces cerevisiae SNF1 complex

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

Fatty acid synthesis and elongation in yeast

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

SNF1/AMPK/SnRK1 kinases, global regulators at the heart of energy control?

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

Reconstruction of the yeast Snf1 kinase regulatory network reveals its role as a global energy regulator

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

An interlaboratory comparison of physiological and genetic properties of four Saccharomyces cerevisiae strains

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

The pathway by which the yeast protein kinase Snf1p controls acquisition of sodium tolerance is different from that mediating glucose regulation

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

The beta-subunits of the Snf1 kinase in Saccharomyces cerevisiae, Gal83 and Sip2, but not Sip1, are redundant in glucose derepression and regulation of sterol biosynthesis

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

Mapping the interaction of Snf1 with TORC1 in Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1007%2FS00438-012-0697-5

21 January 2018

Fermentation performance and intracellular metabolite patterns in laboratory and industrial xylose-fermenting Saccharomyces cerevisiae

1 reference

https://pubmed.ncbi.nlm.nih.gov/22622761

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Regulation of phospholipid biosynthesis in Saccharomyces cerevisiae by inositol. Inositol is an inhibitor of phosphatidylserine synthase activity

1 reference

https://pubmed.ncbi.nlm.nih.gov/22622761

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MGA2 or SPT23 is required for transcription of the delta9 fatty acid desaturase gene, OLE1, and nuclear membrane integrity in Saccharomyces cerevisiae

1 reference

https://pubmed.ncbi.nlm.nih.gov/22622761

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Improved high-performance liquid chromatographic method for the separation and quantification of lipid classes: application to fish lipids

1 reference

https://pubmed.ncbi.nlm.nih.gov/22622761

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Snf1 protein kinase: a key player in the response to cellular stress in yeast

1 reference

https://pubmed.ncbi.nlm.nih.gov/22622761

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Regulation of snf1 protein kinase in response to environmental stress

1 reference

https://pubmed.ncbi.nlm.nih.gov/22622761

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genetic regulation of phospholipid metabolism: yeast as a model eukaryote

1 reference

https://pubmed.ncbi.nlm.nih.gov/22622761

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Regulation of the yeast INO1 gene. The products of the INO2, INO4 and OPI1 regulatory genes are not required for repression in response to inositol

1 reference

https://pubmed.ncbi.nlm.nih.gov/22622761

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

TBP mutants defective in activated transcription in vivo.

1 reference

https://pubmed.ncbi.nlm.nih.gov/22622761

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The OPI1 gene of Saccharomyces cerevisiae, a negative regulator of phospholipid biosynthesis, encodes a protein containing polyglutamine tracts and a leucine zipper

1 reference

https://pubmed.ncbi.nlm.nih.gov/22622761

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

myo-Inositol-1-phosphate synthase. Characteristics of the enzyme and identification of its structural gene in yeast

1 reference

https://pubmed.ncbi.nlm.nih.gov/22622761

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Yeast carbon catabolite repression

1 reference

https://pubmed.ncbi.nlm.nih.gov/22622761

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dynamics of neutral lipid storage in yeast.

1 reference

https://pubmed.ncbi.nlm.nih.gov/22622761

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Fast and accurate preparation fatty acid methyl esters by microwave-assisted derivatization in the yeast Saccharomyces cerevisiae.

1 reference

https://pubmed.ncbi.nlm.nih.gov/22622761

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effect of benzoic acid on metabolic fluxes in yeasts: a continuous-culture study on the regulation of respiration and alcoholic fermentation

1 reference

https://pubmed.ncbi.nlm.nih.gov/22622761

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Production of microbial lipids: III. Influence of C/N ratio--experimental observations

1 reference

https://pubmed.ncbi.nlm.nih.gov/22622761

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

INO2 and INO4 gene products, positive regulators of phospholipid biosynthesis in Saccharomyces cerevisiae, form a complex that binds to the INO1 promoter

1 reference

https://pubmed.ncbi.nlm.nih.gov/22622761

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Coordinate regulation of phospholipid biosynthesis in Saccharomyces cerevisiae: pleiotropically constitutive opi1 mutant

1 reference

https://pubmed.ncbi.nlm.nih.gov/22622761

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Production of microbial lipids: II. Influence of C/N ratio--model prediction

1 reference

https://pubmed.ncbi.nlm.nih.gov/22622761

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of lipid particles of the yeast, Saccharomyces cerevisiae

1 reference

https://pubmed.ncbi.nlm.nih.gov/22622761

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Yeast SNF1 is functionally related to mammalian AMP-activated protein kinase and regulates acetyl-CoA carboxylase in vivo.

1 reference

https://pubmed.ncbi.nlm.nih.gov/22622761

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S00438-012-0697-5

1 reference

Europe PubMed Central

30 May 2018

http://europepmc.org/abstract/MED/22622761

1 reference

Europe PubMed Central

30 May 2018

http://europepmc.org/abstract/MED/22622761

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