A genetic legacy of introgression confounds phylogeny and biogeography in oaks. (Q55020314)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28515204%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

title

A genetic legacy of introgression confounds phylogeny and biogeography in oaks (English)

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28515204%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

0 references

1 reference

Paul S Manos

3

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20 March 2020

publication date

1 May 2017

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28515204%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the Royal Society B

20 March 2020

published in

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20 March 2020

volume

284

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20 March 2020

issue

1854

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Extensive recent secondary contacts between four European white oak species.

20 March 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5443950

Inconsistency of Species Tree Methods under Gene Flow.

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5443950

Inferring Phylogenetic Networks with Maximum Pseudolikelihood under Incomplete Lineage Sorting.

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5443950

A maximum pseudo-likelihood approach for phylogenetic networks

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5443950

Historical introgression among the American live oaks and the comparative nature of tests for introgression

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5443950

Phylogeny and biogeography of the American live oaks (Quercus subsection Virentes): a genomic and population genetics approach

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5443950

Maximum likelihood inference of reticulate evolutionary histories

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5443950

Accurate phylogenetic tree reconstruction from quartets: a heuristic approach

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5443950

Quartet inference from SNP data under the coalescent model

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5443950

Unforeseen Consequences of Excluding Missing Data from Next-Generation Sequences: Simulation Study of RAD Sequences

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5443950

A framework phylogeny of the American oak clade based on sequenced RAD data

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5443950

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5443950

Inferring phylogeny and introgression using RADseq data: an example from flowering plants (Pedicularis: Orobanchaceae)

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5443950

Episodic migration of oaks to Iceland: Evidence for a North Atlantic "land bridge" in the latest Miocene.

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5443950

Phylogenetic and trait similarity to a native species predict herbivory on non-native oaks

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5443950

Rapid SNP discovery and genetic mapping using sequenced RAD markers

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5443950

PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5443950

Evidence for hybridization and introgression within a species-rich oak (Quercus spp.) community.

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5443950

Endemic North African Quercus afares Pomel originates from hybridisation between two genetically very distant oak species (Q. suber L. and Q. canariensis Willd.): evidence from nuclear and cytoplasmic markers

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5443950

Application of phylogenetic networks in evolutionary studies

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5443950

Genome-scale phylogeny and the detection of systematic biases

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5443950

Is sparse taxon sampling a problem for phylogenetic inference?

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5443950

Increased taxon sampling greatly reduces phylogenetic error

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5443950

Genomics and plant breeding

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5443950

Interspecific gene flow in sympatric oaks

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5443950

Phylogenetic analysis under reticulate evolution

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5443950

Phylogeographic structure of white oaks throughout the European continent

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5443950

Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5443950

Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5443950

Adaptation and possible ancient interspecies introgression in pigs identified by whole-genome sequencing

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5443950

Genetic evidence for hybridization in red oaks (Quercus sect. Lobatae, Fagaceae).

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5443950

Natural hybridisation between kermes (Quercus coccifera L.) and holm oaks (Q. ilex L.) revealed by microsatellite markers.

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5443950

Realized gene flow within mixed stands of Quercus robur L. and Q. petraea (Matt.) L. revealed at the stage of naturally established seedling.

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5443950

Selection and dispersal in a multispecies oak hybrid zone

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5443950

Phylogeny, biogeography, and processes of molecular differentiation in Quercus subgenus Quercus (Fagaceae).

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5443950

ITS and ETS Sequence Data and Phylogeny Reconstruction in Allopolyploids and Hybrids

13 August 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSPB.2017.0300

Influence of climatic niche suitability and geographical overlap on hybridization patterns among southern Californian oaks

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSPB.2017.0300

Ecological Species, Multispecies, and Oaks

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSPB.2017.0300

The Species Concept in Quercus

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSPB.2017.0300

The Live Oaks of the Series Virentes

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSPB.2017.0300

XXX.—Descriptions of some new or little-known species of oaks from North-west America

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSPB.2017.0300

Species status of hybridizing oaks

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSPB.2017.0300

Shared alleles in sympatric oaks: recurrent gene flow is a more parsimonious explanation than ancestral polymorphism

21 January 2018

1 reference

12 December 2020

Distinguishing terminal monophyletic groups from reticulate taxa: performance of phenetic, tree-based, and network procedures

1 reference

12 December 2020

Natural hybridization and hybrid zones between Quercus crassifolia and Quercus crassipes (Fagaceae) in Mexico: morphological and molecular evidence

1 reference

12 December 2020

ARE CHLOROPLAST AND MITOCHONDRIAL DNA VARIATION SPECIES INDEPENDENT IN OAKS?

1 reference

12 December 2020

HOW DISCRETE ARE OAK SPECIES? INSIGHTS FROM A HYBRID ZONE BETWEEN QUERCUS GRISEA AND QUERCUS GAMBELII.

1 reference

12 December 2020

HYBRIDS AND PHYLOGENETIC SYSTEMATICS II. THE IMPACT OF HYBRIDS ON CLADISTIC ANALYSIS.

1 reference

12 December 2020

Phylogenomics reveals a complex evolutionary history of lobed-leaf white oaks in Western North America

1 reference

12 December 2020

Identifiers

DOI

10.1098/RSPB.2017.0300

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28515204%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28515204%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

PubMed publication ID

28515204

1 reference