Superfamily I helicases as modular components of DNA-processing machines. (Q55054097)

16 June 2018

title

Superfamily I helicases as modular components of DNA-processing machines. (English)

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16 June 2018

author

Mark S. Dillingham

series ordinal

1

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16 June 2018

publication date

1 April 2011

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16 June 2018

Biochemical Society Transactions

published in

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16 June 2018

volume

39

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16 June 2018

issue

2

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16 June 2018

page(s)

413-423

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16 June 2018

Non-hexameric DNA helicases and translocases: mechanisms and regulation

cites work

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Mechanisms of helicase-catalyzed DNA unwinding

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

SF1 and SF2 helicases: family matters

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Translocation and unwinding mechanisms of RNA and DNA helicases

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Helicases: amino acid sequence comparisons and structure-function relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Systematic identification, classification, and characterization of the open reading frames which encode novel helicase-related proteins in Saccharomyces cerevisiae by gene disruption and Northern analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Modularity and specialization in superfamily 1 and 2 helicases

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Nucleotide control of interdomain interactions in the conformational reaction cycle of SecA

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Helicase motifs: the engine that powers DNA unwinding

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Comparisons between the structures of HCV and Rep helicases reveal structural similarities between SF1 and SF2 super-families of helicases

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Crystal structure of a DExx box DNA helicase

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Major domain swiveling revealed by the crystal structures of complexes of E. coli Rep helicase bound to single-stranded DNA and ADP

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

UvrD helicase unwinds DNA one base pair at a time by a two-part power stroke

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Site-directed mutagenesis of motif III in PcrA helicase reveals a role in coupling ATP hydrolysis to strand separation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Defining the roles of individual residues in the single-stranded DNA binding site of PcrA helicase

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Mutational analysis of Mycobacterium UvrD1 identifies functional groups required for ATP hydrolysis, DNA unwinding, and chemomechanical coupling

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Uncoupling DNA translocation and helicase activity in PcrA: direct evidence for an active mechanism.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Site-directed mutagenesis reveals roles for conserved amino acid residues in the hexameric DNA helicase DnaB from Bacillus stearothermophilus

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Mutation of a highly conserved arginine in motif IV of Escherichia coli DNA helicase II results in an ATP-binding defect.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Kinetic theory of ATP-driven translocases on one-dimensional polymer lattices.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Kinetic parameters of the translocation of bacteriophage T4 gene 41 protein helicase on single-stranded DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

DNA helicases displace streptavidin from biotin-labeled oligonucleotides

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Demonstration of unidirectional single-stranded DNA translocation by PcrA helicase: measurement of step size and translocation speed

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Direct measurement of single-stranded DNA translocation by PcrA helicase using the fluorescent base analogue 2-aminopurine

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

ATP-dependent translocation of proteins along single-stranded DNA: models and methods of analysis of pre-steady state kinetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Mechanism of ATP-dependent translocation of E.coli UvrD monomers along single-stranded DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

A nonuniform stepping mechanism for E. coli UvrD monomer translocation along single-stranded DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Insight into helicase mechanism and function revealed through single-molecule approaches

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Repetitive shuttling of a motor protein on DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

PcrA helicase dismantles RecA filaments by reeling in DNA in uniform steps

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Single-molecule assay reveals strand switching and enhanced processivity of UvrD

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Impediment of E. coli UvrD by DNA-destabilizing force reveals a strained-inchworm mechanism of DNA unwinding

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Processive translocation and DNA unwinding by individual RecBCD enzyme molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Studying RecBCD helicase translocation along Chi-DNA using tethered particle motion with a stretching force.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Direct visualization of RecBCD movement reveals cotranslocation of the RecD motor after chi recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Forward and reverse motion of single RecBCD molecules on DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Lessons learned from UvrD helicase: mechanism for directional movement

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Structure-based model of the stepping motor of PcrA helicase

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

How directional translocation is regulated in a DNA helicase motor

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Mechanistic basis of 5'-3' translocation in SF1B helicases

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Crystal structure of RecBCD enzyme reveals a machine for processing DNA breaks

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

5'-Single-stranded/duplex DNA junctions are loading sites for E. coli UvrD translocase

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

UvrD helicase, unlike Rep helicase, dismantles RecA nucleoprotein filaments in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Opening of nucleic-acid double strands by helicases: active versus passive opening.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Active and passive mechanisms of helicases

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Autoinhibition of Escherichia coli Rep monomer helicase activity by its 2B subdomain

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Evidence for a functional dimeric form of the PcrA helicase in DNA unwinding

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

An oligomeric form of E. coli UvrD is required for optimal helicase activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

E. coli Rep oligomers are required to initiate DNA unwinding in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Initiation and re-initiation of DNA unwinding by the Escherichia coli Rep helicase

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

A Dimer of Escherichia coli UvrD is the active form of the helicase in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Bacillus stearothermophilus PcrA monomer is a single-stranded DNA translocase but not a processive helicase in vitro.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Nucleotide excision repair

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

DNA mismatch repair: functions and mechanisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Construction and analysis of deletions in the structural gene (uvrD) for DNA helicase II of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

A fork-clearing role for UvrD.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

UvrD and UvrD252 counteract RecQ, RecJ, and RecFOR in a rep mutant of Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

UvrD controls the access of recombination proteins to blocked replication forks

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Non-replicative helicases at the replication fork

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Bound Lac repressor protein differentially inhibits the unwinding reactions catalyzed by DNA helicases

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

RNA polymerase mutations that facilitate replication progression in the rep uvrD recF mutant lacking two accessory replicative helicases

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

The helicases DinG, Rep and UvrD cooperate to promote replication across transcription units in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Rep provides a second motor at the replisome to promote duplication of protein-bound DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

The Escherichia coli UvrD helicase is essential for Tus removal during recombination-dependent replication restart from Ter sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Essential bacterial helicases that counteract the toxicity of recombination proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

PcrA is an essential DNA helicase of Bacillus subtilis fulfilling functions both in repair and rolling-circle replication.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

DNA helicase activity of PcrA is not required for the displacement of RecA protein from DNA or inhibition of RecA-mediated strand exchange.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Plasmid replication initiator protein RepD increases the processivity of PcrA DNA helicase

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

The beta-propeller protein YxaL increases the processivity of the PcrA helicase

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

The UvrD helicase and its modulation by the mismatch repair protein MutL.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Escherichia coli ribosomal protein L3 stimulates the helicase activity of the Bacillus stearothermophilus PcrA helicase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

The DNA unwinding reaction catalyzed by Rep protein is facilitated by an RHSP - DNA interaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

PcrA helicase tightly couples ATP hydrolysis to unwinding double-stranded DNA, modulated by the initiator protein for plasmid replication, RepD.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Double strand break unwinding and resection by the mycobacterial helicase-nuclease AdnAB in the presence of single strand DNA-binding protein (SSB).

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

UvrD303, a hyperhelicase mutant that antagonizes RecA-dependent SOS expression by a mechanism that depends on its C terminus

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

The unstructured C-terminal extension of UvrD interacts with UvrB, but is dispensable for nucleotide excision repair

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Evidence for a physical interaction between the Escherichia coli methyl-directed mismatch repair proteins MutL and UvrD.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Mycobacterial UvrD1 is a Ku-dependent DNA helicase that plays a role in multiple DNA repair events, including double-strand break repair

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

The processing of double-stranded DNA breaks for recombinational repair by helicase-nuclease complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

RecBCD enzyme and the repair of double-stranded DNA breaks

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

The 30-kDa C-terminal domain of the RecB protein is critical for the nuclease activity, but not the helicase activity, of the RecBCD enzyme from Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Characterization of the helicase activity of the Escherichia coli RecBCD enzyme using a novel helicase assay.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

A helicase assay based on the displacement of fluorescent, nucleic acid-binding ligands

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Bipolar DNA translocation contributes to highly processive DNA unwinding by RecBCD enzyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

The translocating RecBCD enzyme stimulates recombination by directing RecA protein onto ssDNA in a chi-regulated manner

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

The recombination hotspot chi is a regulatory sequence that acts by attenuating the nuclease activity of the E. coli RecBCD enzyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

RecBCD enzyme is a bipolar DNA helicase

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

RecBCD enzyme is a DNA helicase with fast and slow motors of opposite polarity

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

The AddAB helicase-nuclease catalyses rapid and processive DNA unwinding using a single Superfamily 1A motor domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Isolation and characterization of the C-terminal nuclease domain from the RecB protein of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Stimulation of UvrD helicase by UvrAB.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

ϕX174 cistron A protein is a multifunctional enzyme in DNA replication

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

recD: the gene for an essential third subunit of exonuclease V

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

An expanded view of bacterial DNA replication.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Characterization in vitro and in vivo of the DNA helicase encoded by Deinococcus radiodurans locus DR1572.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

WebLogo: A Sequence Logo Generator

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

Basic local alignment search tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

COBALT: constraint-based alignment tool for multiple protein sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

χ-Sequence recognition and DNA translocation by single RecBCD helicase/nuclease molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBST0390413

21 January 2018

Identifiers

DOI

10.1042/BST0390413

1 reference

16 June 2018

PubMed ID

21428912

1 reference

16 June 2018