Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin. (Q55339477)

2 July 2018

title

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin. (English)

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2 July 2018

1 reference

6

Rob Knight

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2 July 2018

J Gregory Caporaso

8

J Gregory Caporaso

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2 July 2018

Jai Ram Rideout

3

Jai Ram Rideout

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2 July 2018

Gavin A Huttley

7

Gavin A Huttley

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2 July 2018

Evan Bolyen

5

Evan Bolyen

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2 July 2018

author name string

Nicholas A Bokulich

1

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2 July 2018

Benjamin D Kaehler

2

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2 July 2018

Matthew Dillon

4

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2 July 2018

publication date

17 May 2018

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2 July 2018

published in

Microbiome

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2 July 2018

volume

6

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2 July 2018

issue

1

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2 July 2018

page(s)

90

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2 July 2018

Creative Commons Attribution 4.0 International

copyright license

start time

17 May 2018

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

Jupyter notebook file

1 reference

scikit-learn

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/s40168-018-0470-z

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cites work

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Ecological patterns of nifH genes in four terrestrial climatic zones explored with targeted metagenomics using FrameBot, a new informatics tool

3 July 2018

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3 July 2018

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Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

3 July 2018

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3 July 2018

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3 July 2018

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Using the RDP classifier to predict taxonomic novelty and reduce the search space for finding novel organisms

3 July 2018

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3 July 2018

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Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences

3 July 2018

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3 July 2018

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Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions

3 July 2018

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Search and clustering orders of magnitude faster than BLAST

3 July 2018

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QIIME allows analysis of high-throughput community sequencing data

3 July 2018

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3 July 2018

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Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers

3 July 2018

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Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

3 July 2018

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Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA

3 July 2018

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Basic local alignment search tool

3 July 2018

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16S ribosomal DNA amplification for phylogenetic study

3 July 2018

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A communal catalogue reveals Earth's multiscale microbial diversity

3 July 2018

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Fungal identification using a Bayesian classifier and the Warcup training set of internal transcribed spacer sequences

12 August 2018

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Naïve Bayesian classifiers with multinomial models for rRNA taxonomic assignment

12 August 2018

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12 August 2018

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Short pyrosequencing reads suffice for accurate microbial community analysis

12 August 2018

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10.1186/S40168-018-0470-Z

12 August 2018

Identifiers

DOI

1 reference

2 July 2018

Dimensions Publication ID

0 references

1 reference

2 July 2018

PubMed ID

29773078

1 reference

2 July 2018