Definition and testing of the GROMOS force-field versions 54A7 and 54B7 (Q56225271)

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title

Definition and testing of the GROMOS force-field versions 54A7 and 54B7 (English)

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4

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Alan Mark

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Wilfred F van Gunsteren

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object named as

Wilfred F van Gunsteren

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author name string

Nathan Schmid

1

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Alexandra Choutko

3

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Moritz Winger

5

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Andreas P Eichenberger

2

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publication date

30 April 2011

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European Biophysics Journal

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published in

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volume

40

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issue

7

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page(s)

843-856

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https://scigraph.springernature.com/pub.10.1007/s00249-011-0700-9

30 January 2020

exact match

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cites work

Molecular basis of RNA recognition by the human alternative splicing factor Fox-1

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0700-9

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0700-9

Refining the description of peptide backbone conformations improves protein simulations using the GROMOS 53A6 force field

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0700-9

The GROMOS software for biomolecular simulation: GROMOS05.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0700-9

A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0700-9

Methods of NMR structure refinement: molecular dynamics simulations improve the agreement with measured NMR data of a C-terminal peptide of GCN4-p1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0700-9

Treatment of NOE constraints involving equivalent or nonstereoassigned protons in calculations of biomacromolecular structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0700-9

VMD: visual molecular dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0700-9

The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0700-9

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0700-9

Contact Electron‐Spin Coupling of Nuclear Magnetic Moments

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0700-9

All-atom empirical potential for molecular modeling and dynamics studies of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0700-9

A biomolecular force field based on the free enthalpy of hydration and solvation: the GROMOS force-field parameter sets 53A5 and 53A6

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0700-9

Validation of the 53A6 GROMOS force field

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0700-9

A new force field for simulating phosphatidylcholine bilayers

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0700-9

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0700-9

An improved GROMOS96 force field for aliphatic hydrocarbons in the condensed phase

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0700-9

A refined solution structure of hen lysozyme determined using residual dipolar coupling data

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0700-9

Molecular basis of coiled-coil formation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0700-9

AMBER: Assisted model building with energy refinement. A general program for modeling molecules and their interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0700-9

Molecular dynamics with coupling to an external bath

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0700-9

Pseudo-structures for the 20 common amino acids for use in studies of protein conformations by measurements of intramolecular proton-proton distance constraints with nuclear magnetic resonance

21 January 2018

1 reference

12 December 2020

Computation of methodology-independent single-ion solvation properties from molecular simulations. IV. Optimized Lennard-Jones interaction parameter sets for the alkali and halide ions in water

1 reference

12 December 2020

Are NMR-derived model structures for beta-peptides representative for the ensemble of structures adopted in solution?

1 reference

12 December 2020

1.6 A crystal structure of the secreted chorismate mutase from Mycobacterium tuberculosis: novel fold topology revealed

1 reference

12 December 2020

Calibration of the angular dependence of the amide proton-C alpha proton coupling constants, 3JHN alpha, in a globular protein. Use of 3JHN alpha for identification of helical secondary structure

1 reference

12 December 2020

10.1007/S00249-011-0700-9

Identifiers

DOI

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30 January 2020

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