In Sffamily Identification of Genes in Bacteriophage DNA (Q56985498)

article

Language	Label	Description	Also known as
English	In Sffamily Identification of Genes in Bacteriophage DNA	article

Statements

instance of

scholarly article

0 references

title

In Sffamily Identification of Genes in Bacteriophage DNA (English)

0 references

1 reference

Ana M. Cerdeño-Tárraga

object named as

Ana M. Cerdeño-Tárraga

series ordinal

4

0 references

Aaron Earl Darling

object named as

Aaron Darling

series ordinal

5

0 references

Paul Stothard

series ordinal

8

object named as

Paul Stothard

0 references

Donald Seto

series ordinal

9

object named as

Donald Seto

0 references

David Wishart

series ordinal

11

object named as

David S. Wishart

0 references

author name string

Andrew M. Kropinski

series ordinal

1

0 references

Mark Borodovsky

series ordinal

2

0 references

Tim J. Carver

series ordinal

3

0 references

Alexandre Lomsadze

series ordinal

6

0 references

Padmanabhan Mahadevan

series ordinal

7

0 references

Gary Domselaar

series ordinal

10

0 references

language of work or name

English

0 references

publication date

2009

0 references

published in

Methods in Molecular Biology

0 references

page(s)

57-89

0 references

cites work

GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1093/NAR/GKI487

BASys: a web server for automated bacterial genome annotation

2 references

5 May 2024

https://opencitations.net/index/api/v1/citations/10.1093/NAR/GKI593

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Bacteriophages: evolution of the majority

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

GeneOrder: comparing the order of genes in small genomes

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Artemis: sequence visualization and annotation

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

The complete genome sequence of the Streptomyces temperate phage straight phiC31: evolutionary relationships to other viruses

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Strand-specific compositional asymmetries in double-stranded DNA viruses.

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

rVISTA 2.0: evolutionary analysis of transcription factor binding sites

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

The complete genomes and proteomes of 27 Staphylococcus aureus bacteriophages

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Identification of proteins associated with murine cytomegalovirus virions

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Synthesis of a bacteriophage MB78 late protein by novel ribosomal frameshifting.

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

A programmed translational frameshift is required for the synthesis of a bacteriophage lambda tail assembly protein.

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

PipMaker--a web server for aligning two genomic DNA sequences

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Sequence analysis and molecular characterization of the temperate lactococcal bacteriophage r1t.

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Genome of bacteriophage P1

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

ACT: the Artemis Comparison Tool

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Integration site for Streptomyces phage phiBT1 and development of site-specific integrating vectors

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

The genome of S-PM2, a "photosynthetic" T4-type bacteriophage that infects marine Synechococcus strains

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Extensive DNA Inversions in the B. fragilis Genome Control Variable Gene Expression

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

The chromosome of Shigella flexneri bacteriophage Sf6: complete nucleotide sequence, genetic mosaicism, and DNA packaging.

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Microbial gene identification using interpolated Markov models

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

The PSIPRED protein structure prediction server

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

InterPro, progress and status in 2005

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Bacteriophage T4 Genome

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

PSORTdb: a protein subcellular localization database for bacteria

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

The 3'-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

CDD: a curated Entrez database of conserved domain alignments

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Widespread distribution of a group I intron and its three deletion derivatives in the lysin gene of Streptococcus thermophilus bacteriophages

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

An analysis of initiation codon utilization in the Domain Bacteria - concerns about the quality of bacterial genome annotation

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

The genome of BCJA1c: a bacteriophage active against the alkaliphilic bacterium, Bacillus clarkii

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Three-component-mediated serotype conversion in Pseudomonas aeruginosa by bacteriophage D3.

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

The Universal Protein Resource (UniProt)

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Improved prediction of signal peptides: SignalP 3.0

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Origins of highly mosaic mycobacteriophage genomes

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Improved microbial gene identification with GLIMMER

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

GeneOrder3.0: software for comparing the order of genes in pairs of small bacterial genomes

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

The COG database: an updated version includes eukaryotes

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Transfer of photosynthesis genes to and from Prochlorococcus viruses

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Introns and intein coding sequence in the ribonucleotide reductase genes of Bacillus subtilis temperate bacteriophage SPbeta

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Mauve: multiple alignment of conserved genomic sequence with rearrangements

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Improving gene annotation of complete viral genomes

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Genome of staphylococcal phage K: a new lineage of Myoviridae infecting gram-positive bacteria with a low G+C content.

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

The nicking homing endonuclease I-BasI is encoded by a group I intron in the DNA polymerase gene of the Bacillus thuringiensis phage Bastille

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

A self-splicing group I intron in DNA polymerase genes of T7-like bacteriophages

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Molecular and transcriptional analysis of the temperate lactococcal bacteriophage Tuc2009.

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Heuristic approach to deriving models for gene finding

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Programmed translational frameshift in the bacteriophage P2 FETUD tail gene operon

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

The Pfam protein families database

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Recent improvements to the PROSITE database

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

SMART 4.0: towards genomic data integration

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

AMIGene: Annotation of MIcrobial Genes

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Genome and proteome of Listeria monocytogenes phage PSA: an unusual case for programmed + 1 translational frameshifting in structural protein synthesis

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Basic local alignment search tool

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Genome structure of mycobacteriophage D29: implications for phage evolution

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

GeneMark.hmm: new solutions for gene finding

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Unexpected abundance of self-splicing introns in the genome of bacteriophage Twort: introns in multiple genes, a single gene with three introns, and exon skipping by group I ribozymes

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Iterated profile searches with PSI-BLAST--a tool for discovery in protein databases

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

CINEMA-MX: a modular multiple alignment editor

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

zPicture: dynamic alignment and visualization tool for analyzing conservation profiles

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

WebACT--an online companion for the Artemis Comparison Tool

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Terminal-sequence analysis of bacterial ribosomal RNA. Correlation between the 3'-terminal-polypyrimidine sequence of 16-S RNA and translational specificity of the ribosome

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

InterProScan: protein domains identifier

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

PathoGene: a pathogen coding sequence discovery and analysis resource

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Overexpression, purification, and analysis of the c1 repressor protein of Pseudomonas aeruginosa bacteriophage D3.

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Detection of short protein coding regions within the cyanobacterium genome: application of the hidden Markov model

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

The genome of bacteriophage K1F, a T7-like phage that has acquired the ability to replicate on K1 strains of Escherichia coli

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Genomic sequence of C1, the first streptococcal phage

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

EasyGene--a prokaryotic gene finder that ranks ORFs by statistical significance

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Programmed translational frameshifting.

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Frameshifting in gene 10 of bacteriophage T7.

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Complete genome sequence of the broad-host-range vibriophage KVP40: comparative genomics of a T4-related bacteriophage

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Comparative genomics of the T4-Like Escherichia coli phage JS98: implications for the evolution of T4 phages

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

CoreGenes: a computational tool for identifying and cataloging "core" genes in a set of small genomes

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/978-1-60327-565-1_6

Identifiers

DOI

10.1007/978-1-60327-565-1_6

0 references

PubMed publication ID

19082552

0 references

In Sffamily Identification of Genes in Bacteriophage DNA (Q56985498)

Statements

Identifiers

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Navigation menu

In Sffamily Identification of Genes in Bacteriophage DNA (Q56985498)

Statements

Identifiers

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Navigation menu

Search