Diversity, Specificity, and Phylogenetic Relationships of Endohyphal Bacteria in Fungi That Inhabit Tropical Seeds and Leaves (Q57898981)

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Paul-Camilo Zalamea

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Rachel E. Gallery

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Adam S. Davis

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David A. Baltrus

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A. Elizabeth Arnold

Frontiers in Ecology and Evolution

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publication date

13 October 2016

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published in

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volume

4

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cites work

Basic local alignment search tool

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Isolation of Endohyphal Bacteria from Foliar Ascomycota and In Vitro Establishment of Their Symbiotic Associations

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Diversity and phylogenetic affinities of foliar fungal endophytes in loblolly pine inferred by culturing and environmental PCR.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Diversity and host range of foliar fungal endophytes: are tropical leaves biodiversity hotspots?

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Fungal endophytes limit pathogen damage in a tropical tree

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Pathogens and insect herbivores drive rainforest plant diversity and composition

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Phylogenetic characterization and in situ detection of a Cytophaga-Flexibacter-Bacteroides phylogroup bacterium in Tuber borchii vittad. Ectomycorrhizal mycelium

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Phenotypic variability and phylogenetic relationships of the genera Tolypothrix and Calothrix (Nostocales, Cyanobacteria) from running water

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Occurrence and distribution of endobacteria in the plant-associated mycelium of the ectomycorrhizal fungus Laccaria bicolor S238N.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Vertical transmission of endobacteria in the arbuscular mycorrhizal fungus Gigaspora margarita through generation of vegetative spores.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

'Candidatus glomeribacter gigasporarum' gen. nov., sp. nov., an endosymbiont of arbuscular mycorrhizal fungi

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Delignification by Wood-Decay Fungi

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Testing for phylogenetic signal in comparative data: behavioral traits are more labile

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Plants, mycorrhizal fungi, and bacteria: a network of interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Mechanisms underlying beneficial plant-fungus interactions in mycorrhizal symbiosis

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Taxonomic evaluation of the genus Enterobacter based on multilocus sequence analysis (MLSA): Proposal to reclassify E. nimipressuralis and E. amnigenus into Lelliottia gen. nov. as Lelliottia nimipressuralis comb. nov. and Lelliottia amnigena comb. n

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Multigene phylogeny reveals new lineage for Stachybotrys chartarum, the indoor air fungus

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Multistate outbreak of Fusarium keratitis associated with use of a contact lens solution

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Delimitation of Neonectria and Cylindrocarpon (Nectriaceae, Hypocreales, Ascomycota) and related genera with Cylindrocarpon-like anamorphs

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Seed survival in soil: interacting effects of predation, dormancy and the soil microbial community

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

jModelTest 2: more models, new heuristics and parallel computing

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Associations between species and groups of sites: indices and statistical inference.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Interannual variation and host affiliations of endophytic fungi associated with ferns at La Selva, Costa Rica

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Fungal identification using a Bayesian classifier and the Warcup training set of internal transcribed spacer sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Endogone, one of the oldest plant-associated fungi, host unique Mollicutes-related endobacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Detection of a novel intracellular microbiome hosted in arbuscular mycorrhizal fungi

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

MUSCLE: multiple sequence alignment with high accuracy and high throughput

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Base-calling of automated sequencer traces using phred. II. Error probabilities

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

The mycorrhiza helper bacteria revisited

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Selectivity in mammalian extinction risk and threat types: a new measure of phylogenetic signal strength in binary traits

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Diversity, host affinity, and distribution of seed-infecting fungi: a case study with Cecropia

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

The genome of the obligate endobacterium of an AM fungus reveals an interphylum network of nutritional interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Evolutionary ecology of plant diseases in natural ecosystems

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Phylogenetic signal in plant pathogen-host range

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Foliar pathogenesis and plant water relations: a review.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Assessing phylogenetic signal with measurement error: a comparison of Mantel tests, Blomberg et al.'s K, and phylogenetic distograms

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Diverse bacteria inhabit living hyphae of phylogenetically diverse fungal endophytes

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Endohyphal bacterium enhances production of indole-3-acetic acid by a foliar fungal endophyte

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Determination of World Plant Formations From Simple Climatic Data

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Phylogenetic status of Xylaria subgenus Pseudoxylaria among taxa of the subfamily Xylarioideae (Xylariaceae) and phylogeny of the taxa involved in the subfamily

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

MRBAYES: Bayesian inference of phylogenetic trees

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

21 January 2018

The plant immune system

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Transfer of [Flexibacter] sancti, [Flexibacter] filiformis, [Flexibacter] japonensis and [Cytophaga] arvensicola to the genus Chitinophaga and description of Chitinophaga skermanii sp. nov.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Picante: R tools for integrating phylogenies and ecology

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Relationships between phyllosphere bacterial communities and plant functional traits in a neotropical forest

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Endophytic fungi alter foraging and dispersal by desert seed-harvesting ants.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

The closest BLAST hit is often not the nearest neighbor.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Complete genome sequence of Burkholderia rhizoxinica, an Endosymbiont of Rhizopus microsporus.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Calonectria species associated with cutting rot of Eucalyptus

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Presymbiotic growth and sporal morphology are affected in the arbuscular mycorrhizal fungus Gigaspora margarita cured of its endobacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

A virus in a fungus in a plant: three-way symbiosis required for thermal tolerance

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

The obligate endobacteria of arbuscular mycorrhizal fungi are ancient heritable components related to the Mollicutes

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

The mean and variance of phylogenetic diversity under rarefaction

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Molecular phylogenetic diversity, multilocus haplotype nomenclature, and in vitro antifungal resistance within the Fusarium solani species complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

The effect of fungal pathogens on the water and carbon economy of trees: implications for drought-induced mortality

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Burkholderia rhizoxinica sp. nov. and Burkholderia endofungorum sp. nov., bacterial endosymbionts of the plant-pathogenic fungus Rhizopus microsporus

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Pathogenic fungus harbours endosymbiotic bacteria for toxin production

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Endosymbiont-Dependent Host Reproduction Maintains Bacterial-Fungal Mutualism

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Strong coupling of plant and fungal community structure across western Amazonian rainforests

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Factors that affect large subunit ribosomal DNA amplicon sequencing studies of fungal communities: classification method, primer choice, and error

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

jModelTest: phylogenetic model averaging

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Fungal endophytes: diversity and functional roles.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

MrBayes 3: Bayesian phylogenetic inference under mixed models

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Endobacteria affect the metabolic profile of their host Gigaspora margarita, an arbuscular mycorrhizal fungus

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Symbiosis with an endobacterium increases the fitness of a mycorrhizal fungus, raising its bioenergetic potential.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Fungal endophytes of aquatic macrophytes: diverse host-generalists characterized by tissue preferences and geographic structure

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Detection of betaproteobacteria inside the mycelium of the fungus Mortierella elongata

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

The influence of soil moisture on losses of buried seeds to fungi

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Detection and identification of bacteria intimately associated with fungi of the order Sebacinales.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Clonality, recombination, and hybridization in the plumbing-inhabiting human pathogen Fusarium keratoplasticum inferred from multilocus sequence typing

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Phylogenetic relationships among members of the Fusarium solani species complex in human infections and the descriptions of F. keratoplasticum sp. nov. and F. petroliphilum stat. nov.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

A taxonomic framework for emerging groups of ecologically important marine gammaproteobacteria based on the reconstruction of evolutionary relationships using genome-scale data

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Taxonomic Note: A Place for DNA-DNA Reassociation and 16S rRNA Sequence Analysis in the Present Species Definition in Bacteriology

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Chloracidobacterium thermophilum gen. nov., sp. nov.: an anoxygenic microaerophilic chlorophotoheterotrophic acidobacterium

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

The evolutionary diversification of cyanobacteria: molecular-phylogenetic and paleontological perspectives

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Diversity and evolutionary origins of fungi associated with seeds of a neotropical pioneer tree: a case study for analysing fungal environmental samples

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Contributions of North American endophytes to the phylogeny, ecology, and taxonomy of Xylariaceae (Sordariomycetes, Ascomycota).

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Wautersia gen. nov., a novel genus accommodating the phylogenetic lineage including Ralstonia eutropha and related species, and proposal of Ralstonia [Pseudomonas] syzygii (Roberts et al. 1990) comb. nov

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

What to protect?—Systematics and the agony of choice

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Phylogenetic analyses of phylum Actinobacteria based on whole genome sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Microbial life in the phyllosphere.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Phylocom: software for the analysis of phylogenetic community structure and trait evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Phylogeny of gammaproteobacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

A robust species tree for the alphaproteobacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Do soil microbes and abrasion by soil particles influence persistence and loss of physical dormancy in seeds of tropical pioneers?

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Members of the Fusarium solani species complex that cause infections in both humans and plants are common in the environment.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Fungal endophyte communities reflect environmental structuring across a Hawaiian landscape.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116

Interspecific variation in susceptibility to fungal pathogens in seeds of 10 tree species in the neotropical genus Cecropia

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFEVO.2016.00116