ORF8a of SARS-CoV forms an ion channel: Experiments and molecular dynamics simulations (Q57971518)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20708597%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

title

ORF8a of SARS-CoV forms an ion channel: experiments and molecular dynamics simulations (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20708597%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

1 reference

protein non-structural 8a [SARS-Cov]

0 references

author

Jens Krüger

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20708597%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

Hao-jen Hsu

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20708597%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

Wolfgang Fischer

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20708597%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

author name string

Cheng-Chang Chen

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20708597%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

Issara Sramala

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20708597%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

Peter Henklein

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20708597%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

Yi-Ming Arthur Chen

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20708597%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

publication date

12 August 2010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20708597%20AND%20SRC:MED&resulttype=core&format=json

Biochimica et Biophysica Acta

10 February 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20708597%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

volume

1808

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20708597%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

issue

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20708597%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

page(s)

572-579

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20708597%20AND%20SRC:MED&resulttype=core&format=json

SARS--beginning to understand a new virus

10 February 2020

cites work

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

A novel coronavirus associated with severe acute respiratory syndrome

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

The Genome sequence of the SARS-associated coronavirus

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Characterization of a novel coronavirus associated with severe acute respiratory syndrome

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Isolation and characterization of viruses related to the SARS coronavirus from animals in southern China

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Viral ion channels: structure and function.

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Structure-function correlates of Vpu, a membrane protein of HIV-1.

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Viral channel-forming proteins.

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Membrane composition determines pardaxin's mechanism of lipid bilayer disruption

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Structure and orientation of pardaxin determined by NMR experiments in model membranes

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Alamethicin aggregation in lipid membranes.

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

NMR Structure of Pardaxin, a Pore-forming Antimicrobial Peptide, in Lipopolysaccharide Micelles: MECHANISM OF OUTER MEMBRANE PERMEABILIZATION

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Severe acute respiratory syndrome-associated coronavirus 3a protein forms an ion channel and modulates virus release

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Membrane protein folding and oligomerization: the two-stage model

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Membrane protein folding: beyond the two stage model.

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Towards a mechanism of function of the viral ion channel Vpu from HIV-1.

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Prediction of transmembrane alpha-helices in prokaryotic membrane proteins: the dense alignment surface method

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

A hidden Markov model for predicting transmembrane helices in protein sequences

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Basic charge clusters and predictions of membrane protein topology.

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

SOSUI: classification and secondary structure prediction system for membrane proteins

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Exploring the conformational space of Vpu from HIV-1: a versatile adaptable protein.

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Assembly of Viral Membrane Proteins

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Biophysical characterization of Vpu from HIV-1 suggests a channel-pore dualism

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Melittin induced voltage-dependent conductance in DOPC lipid bilayers

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

The role played by lipids unsaturation upon the membrane interaction of the Helicobacter pylori HP(2-20) antimicrobial peptide analogue HPA3.

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Identification of an ion channel activity of the Vpu transmembrane domain and its involvement in the regulation of virus release from HIV-1-infected cells

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

The Vpu protein of human immunodeficiency virus type 1 forms cation-selective ion channels

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Cation-selective ion channels formed by p7 of hepatitis C virus are blocked by hexamethylene amiloride

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Activation-dependent subconductance levels in the drk1 K channel suggest a subunit basis for ion permeation and gating

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Molecular dynamics simulations of the ErbB-2 transmembrane domain within an explicit membrane environment: comparison with vacuum simulations

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Mapping the energy surface of transmembrane helix-helix interactions

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Experimentally based orientational refinement of membrane protein models: A structure for the Influenza A M2 H+ channel

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

The structure of the HIV-1 Vpu ion channel: modelling and simulation studies.

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Membrane assembly of simple helix homo-oligomers studied via molecular dynamics simulations

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Side-chain contributions to membrane protein structure and stability

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Solving the membrane protein folding problem

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Bundles Consisting of Extended Transmembrane Segments of Vpu from HIV-1: Computer Simulations and Conductance Measurements†

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Reconstructing potentials of mean force from short steered molecular dynamics simulations of Vpu from HIV-1.

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Structure of a potentially open state of a proton-activated pentameric ligand-gated ion channel

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Evidence that the M2 membrane-spanning region lines the ion channel pore of the nicotinic receptor

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Bundles of amphipathic transmembrane alpha-helices as a structural motif for ion-conducting channel proteins: studies on sodium channels and acetylcholine receptors

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Alphavirus 6K proteins form ion channels

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

A proton-mediated conformational shift identifies a mobile pore-lining cysteine residue (Cys-561) in human concentrative nucleoside transporter 3.

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Conserved cysteine residues in the pore region are obligatory for human TRPM2 channel function

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Channel-lining residues of the AMPA receptor M2 segment: structural environment of the Q/R site and identification of the selectivity filter.

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Solid-state NMR and molecular dynamics simulations reveal the oligomeric ion-channels of TM2-GABA(A) stabilized by intermolecular hydrogen bonding

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Tilt angle of a trans-membrane helix is determined by hydrophobic mismatch

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Structure, topology, and tilt of cell-signaling peptides containing nuclear localization sequences in membrane bilayers determined by solid-state NMR and molecular dynamics simulation studies

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Snorkeling of lysine side chains in transmembrane helices: how easy can it get?

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Simulation of the HIV-1 Vpu transmembrane domain as a pentameric bundle

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

Accurate bond and angle parameters for X-ray protein structure refinement

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593

TMBASE - A database of membrane spanning protein segments

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094593