PASTA: Ultra-Large Multiple Sequence Alignment (Q58490488)

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English	PASTA: Ultra-Large Multiple Sequence Alignment	No description defined

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instance of

scholarly article

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title

PASTA: Ultra-Large Multiple Sequence Alignment (English)

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1 reference

Siavash Mirarab

1

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Tandy Warnow

series ordinal

3

object named as

Tandy Warnow

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author name string

Nam Nguyen

series ordinal

2

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language of work or name

English

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publication date

2014

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published in

Lecture Notes in Computer Science

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page(s)

177-191

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cites work

Making automated multiple alignments of very large numbers of protein sequences

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1007%2F978-3-319-05269-4_15

retrieved

31 March 2020

Rapid and accurate large-scale coestimation of sequence alignments and phylogenetic trees

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1007%2F978-3-319-05269-4_15

retrieved

31 March 2020

SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees.

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1007%2F978-3-319-05269-4_15

retrieved

31 March 2020

DACTAL: divide-and-conquer trees (almost) without alignments

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1007%2F978-3-319-05269-4_15

retrieved

31 March 2020

Multiple sequence alignment: a major challenge to large-scale phylogenetics

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1007%2F978-3-319-05269-4_15

retrieved

31 March 2020

MAFFT version 5: improvement in accuracy of multiple sequence alignment

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1007%2F978-3-319-05269-4_15

retrieved

31 March 2020

Multiple alignment by aligning alignments

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1007%2F978-3-319-05269-4_15

retrieved

31 March 2020

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1007%2F978-3-319-05269-4_15

retrieved

31 March 2020

MUSCLE: multiple sequence alignment with high accuracy and high throughput

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1007%2F978-3-319-05269-4_15

retrieved

31 March 2020

FastTree 2--approximately maximum-likelihood trees for large alignments

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1007%2F978-3-319-05269-4_15

retrieved

31 March 2020

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1007%2F978-3-319-05269-4_15

retrieved

31 March 2020

A new generation of homology search tools based on probabilistic inference

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1007%2F978-3-319-05269-4_15

retrieved

31 March 2020

HMMER web server: interactive sequence similarity searching

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1007%2F978-3-319-05269-4_15

retrieved

31 March 2020

FastSP: linear time calculation of alignment accuracy

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1007%2F978-3-319-05269-4_15

retrieved

31 March 2020

The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs: Correction

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1007%2F978-3-319-05269-4_15

retrieved

31 March 2020

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1007%2F978-3-319-05269-4_15

retrieved

31 March 2020

Adding unaligned sequences into an existing alignment using MAFFT and LAST.

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1007%2F978-3-319-05269-4_15

retrieved

31 March 2020

Clustal W and Clustal X version 2.0

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1007%2F978-3-319-05269-4_15

retrieved

31 March 2020

BAli-Phy: simultaneous Bayesian inference of alignment and phylogeny

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1007%2F978-3-319-05269-4_15

retrieved

31 March 2020

Identifiers

DOI

10.1007/978-3-319-05269-4_15

0 references

DBLP publication ID

conf/recomb/MirarabNW14

1 reference

stated in

DBLP Dataset 2021-01-02

retrieved

28 January 2021

PASTA: Ultra-Large Multiple Sequence Alignment (Q58490488)

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PASTA: Ultra-Large Multiple Sequence Alignment (Q58490488)

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