Use of normal modes for structural modeling of proteins: the case study of rat heme oxygenase 1 (Q58571808)

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3 January 2020

title

Use of normal modes for structural modeling of proteins: the case study of rat heme oxygenase 1 (English)

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1

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3 January 2020

author name string

David Perahia

series ordinal

2

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publication date

20 February 2008

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European Biophysics Journal

3 January 2020

published in

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volume

37

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3 January 2020

issue

7

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page(s)

1157-1165

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Accounting for global protein deformability during protein-protein and protein-ligand docking

3 January 2020

cites work

1 reference

Crossref

https://api.crossref.org/works/10.1007%2FS00249-008-0279-Y

Folding of small helical proteins assisted by small-angle X-ray scattering profiles.

21 January 2018

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12 December 2020

Normal-Mode Refinement of Anisotropic Thermal Parameters for Potassium Channel KcsA at 3.2 Å Crystallographic Resolution

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12 December 2020

Tools for comparative protein structure modeling and analysis

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12 December 2020

Comparison of the heme-free and -bound crystal structures of human heme oxygenase-1

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12 December 2020

Normal mode based flexible fitting of high-resolution structure into low-resolution experimental data from cryo-EM.

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12 December 2020

Anisotropic network model: systematic evaluation and a new web interface.

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12 December 2020

Normal mode analysis as a prerequisite for drug design: Application to matrix metalloproteinases inhibitors

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12 December 2020

Analysis of the low frequency normal modes of the T-state of aspartate transcarbamylase.

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12 December 2020

Crystal structure of rat apo-heme oxygenase-1 (HO-1): mechanism of heme binding in HO-1 inferred from structural comparison of the apo and heme complex forms

1 reference

12 December 2020

Motions in hemoglobin studied by normal mode analysis and energy minimization: evidence for the existence of tertiary T-like, quaternary R-like intermediate structures

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12 December 2020

Building-block approach for determining low-frequency normal modes of macromolecules.

1 reference

12 December 2020

ModLoop: automated modeling of loops in protein structures

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12 December 2020

Representing receptor flexibility in ligand docking through relevant normal modes.

1 reference

12 December 2020

Computation of low-frequency normal modes in macromolecules: improvements to the method of diagonalization in a mixed basis and application to hemoglobin.

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12 December 2020

A normal mode analysis of structural plasticity in the biomolecular motor F(1)-ATPase

1 reference

12 December 2020

Crystal structure of rat heme oxygenase-1 in complex with heme

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12 December 2020

Core deformations in protein families: a physical perspective

1 reference

12 December 2020

A coarse-grained normal mode approach for macromolecules: an efficient implementation and application to Ca(2+)-ATPase

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12 December 2020

10.1007/S00249-008-0279-Y

Identifiers

DOI

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3 January 2020

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