RNA-seq analysis reveals considerable genetic diversity and provides genetic markers saturating all chromosomes in the diploid wild wheat relative Aegilops umbellulata (Q58576123)

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scientific article published on 08 November 2018

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English	RNA-seq analysis reveals considerable genetic diversity and provides genetic markers saturating all chromosomes in the diploid wild wheat relative Aegilops umbellulata	scientific article published on 08 November 2018

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2 May 2020

RNA-seq analysis reveals considerable genetic diversity and provides genetic markers saturating all chromosomes in the diploid wild wheat relative Aegilops umbellulata (English)

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genetic diversity

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Aegilops umbellulata

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Aegilops umbellulata

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Kentaro Yoshida

2

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2 May 2020

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Moeko Okada

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Ryo Nishijima

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Asami Michikawa

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Yuka Motoi

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Kazuhiro Sato

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Shigeo Takumi

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8 November 2018

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BMC Plant Biology

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271

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1

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2 May 2020

On the number of segregating sites in genetical models without recombination

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https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

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Statistical method for testing the neutral mutation hypothesis by DNA polymorphism

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https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

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Plasmon analyses of Triticum (wheat) and Aegilops: PCR-single-strand conformational polymorphism (PCR-SSCP) analyses of organellar DNAs

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https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

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Genome relationships: the grass model in current research

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https://pubmed.ncbi.nlm.nih.gov/30409135

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Hitchhiking under positive Darwinian selection

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https://pubmed.ncbi.nlm.nih.gov/30409135

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Characterization of genetic variation in and phylogenetic relationships among diploid Aegilops species by AFLP: incongruity of chloroplast and nuclear data

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https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

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GMAP: a genomic mapping and alignment program for mRNA and EST sequences

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https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

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Control of Endosperm Proteins in TRITICUM AESTIVUM (Var. Chinese Spring) and AEGILOPS UMBELLULATA by Homoeologous Group 1 Chromosomes

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https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

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Primer3Plus, an enhanced web interface to Primer3

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https://pubmed.ncbi.nlm.nih.gov/30409135

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DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

1 reference

https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

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The Sequence Alignment/Map format and SAMtools

1 reference

https://pubmed.ncbi.nlm.nih.gov/30409135

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Circos: an information aesthetic for comparative genomics

1 reference

https://pubmed.ncbi.nlm.nih.gov/30409135

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BEDTools: a flexible suite of utilities for comparing genomic features

1 reference

https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

1 reference

https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

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Unlocking the barley genome by chromosomal and comparative genomics

1 reference

https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

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Full-length transcriptome assembly from RNA-Seq data without a reference genome

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https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

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Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives

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https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

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Fast gapped-read alignment with Bowtie 2

1 reference

https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

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A physical, genetic and functional sequence assembly of the barley genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

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Discovery of high-confidence single nucleotide polymorphisms from large-scale de novo analysis of leaf transcripts of Aegilops tauschii, a wild wheat progenitor

1 reference

https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

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Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation

1 reference

https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

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Evolutionary consequences of self-fertilization in plants

1 reference

https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

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A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor

1 reference

https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

based on heuristic

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De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

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Coval: improving alignment quality and variant calling accuracy for next-generation sequencing data.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

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Genome-wide marker development for the wheat D genome based on single nucleotide polymorphisms identified from transcripts in the wild wheat progenitor Aegilops tauschii

1 reference

https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

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Identification and localization of molecular markers linked to the Lr9 leaf rust resistance gene of wheat

1 reference

https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

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Trimmomatic: a flexible trimmer for Illumina sequence data

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https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

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De novo transcriptome assembly and analyses of gene expression during photomorphogenesis in diploid wheat Triticum monococcum

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https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

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RNA-Seq bulked segregant analysis enables the identification of high-resolution genetic markers for breeding in hexaploid wheat

1 reference

https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

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Intraspecific lineage divergence and its association with reproductive trait change during species range expansion in central Eurasian wild wheat Aegilops tauschii Coss. (Poaceae)

1 reference

https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

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Ensembl Genomes 2016: more genomes, more complexity

1 reference

https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

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Fine genetic mapping of spot blotch resistance gene Sb3 in wheat (Triticum aestivum).

1 reference

https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

based on heuristic

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Genome-wide identification of novel genetic markers from RNA sequencing assembly of diverse Aegilops tauschii accessions

1 reference

https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

based on heuristic

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Dissecting the U, M, S and C genomes of wild relatives of bread wheat (Aegilops spp.) into chromosomes and exploring their synteny with wheat

1 reference

https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

based on heuristic

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Genotype-by-sequencing facilitates genetic mapping of a stem rust resistance locus in Aegilops umbellulata, a wild relative of cultivated wheat

1 reference

https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

based on heuristic

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Quantitative trait locus analysis for spikelet shape-related traits in wild wheat progenitor Aegilops tauschii: Implications for intraspecific diversification and subspecies differentiation

1 reference

https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

based on heuristic

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Genotyping-by-Sequencing Facilitates a High-Density Consensus Linkage Map for Aegilops umbellulata, a Wild Relative of Cultivated Wheat

1 reference

https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A chromosome conformation capture ordered sequence of the barley genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Low-molecular-weight glutenin subunits from the 1U genome of Aegilops umbellulata confer superior dough rheological properties and improve breadmaking quality of bread wheat.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

based on heuristic

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Hybrid incompatibilities in interspecific crosses between tetraploid wheat and its wild diploid relative Aegilops umbellulata

1 reference

https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

based on heuristic

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Genome sequence of the progenitor of the wheat D genome Aegilops tauschii

1 reference

https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

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The Aegilops tauschii genome reveals multiple impacts of transposons.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30409135

12 December 2020

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Identifiers

10.1186/S12870-018-1498-8

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2 May 2020

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2 May 2020

1 reference

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2 May 2020

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