Whole-genome sequencing and analyses identify high genetic heterogeneity, diversity and endemicity of rotavirus genotype P[6] strains circulating in Africa (Q59360740)

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scientific article published on 18 May 2018

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English	Whole-genome sequencing and analyses identify high genetic heterogeneity, diversity and endemicity of rotavirus genotype P[6] strains circulating in Africa	scientific article published on 18 May 2018

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27 March 2020

Whole-genome sequencing and analyses identify high genetic heterogeneity, diversity and endemicity of rotavirus genotype P[6] strains circulating in Africa (English)

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27 March 2020

whole genome sequencing

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Martin M Nyaga

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Yi Tan

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Mapaseka L Seheri

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Asmik Akopov

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Nadia B Fedorova

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A Duncan Steele

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Jason M Mwenda

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Brett E Pickett

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M Jeffrey Mphahlele

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Rebecca A Halpin

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Susmita Shrivastava

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18 May 2018

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27 March 2020

Infection, Genetics and Evolution

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27 March 2020

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79-88

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27 March 2020

Comparative amino acid sequence analysis of the major outer capsid protein (VP7) of porcine rotaviruses with G3 and G5 serotype specificities isolated in Venezuela and Argentina.

1 reference

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12 December 2020

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The molecular clock of HIV-1 unveiled through analysis of a known transmission history

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12 December 2020

based on heuristic

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Prevalence of unusual human rotavirus strains in Ghanaian children

1 reference

https://pubmed.ncbi.nlm.nih.gov/29782933

12 December 2020

based on heuristic

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Rates of molecular evolution in RNA viruses: a quantitative phylogenetic analysis

1 reference

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12 December 2020

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Rotavirus strains circulating in Africa during 1996–1999: emergence of G9 strains and P[6] strains

1 reference

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12 December 2020

based on heuristic

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Genetic characterization of a novel, naturally occurring recombinant human G6P[6] rotavirus

1 reference

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12 December 2020

based on heuristic

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Relationships among porcine and human P[6] rotaviruses: evidence that the different human P[6] lineages have originated from multiple interspecies transmission events

1 reference

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Correlating viral phenotypes with phylogeny: accounting for phylogenetic uncertainty

1 reference

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BEAST: Bayesian evolutionary analysis by sampling trees

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Full genome-based classification of rotaviruses reveals a common origin between human Wa-Like and porcine rotavirus strains and human DS-1-like and bovine rotavirus strains

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Rates of evolutionary change in viruses: patterns and determinants

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12 December 2020

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The genomic and epidemiological dynamics of human influenza A virus

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12 December 2020

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Detection of a porcine-like rotavirus in a child with enteritis in Italy

1 reference

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12 December 2020

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RotaC: a web-based tool for the complete genome classification of group A rotaviruses

1 reference

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12 December 2020

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inferred from PubMed ID database lookup

Effect of Human Rotavirus Vaccine on Severe Diarrhea in African Infants

1 reference

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12 December 2020

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How RNA viruses maintain their genome integrity

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12 December 2020

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Full genomic analysis of a porcine-bovine reassortant G4P[6] rotavirus strain R479 isolated from an infant in China

1 reference

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Phylodynamic analyses of rotavirus genotypes G9 and G12 underscore their potential for swift global spread.

1 reference

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12 December 2020

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Rotavirus strain types circulating in Africa: Review of studies published during 1997-2006.

1 reference

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12 December 2020

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Genetic and Antigenic Diversity of Human Rotaviruses: Potential Impact on Vaccination Programs

1 reference

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12 December 2020

based on heuristic

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Efficacy of pentavalent rotavirus vaccine against severe rotavirus gastroenteritis in infants in developing countries in sub-Saharan Africa: a randomised, double-blind, placebo-controlled trial

1 reference

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12 December 2020

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An unusual outbreak of rotavirus genotype G2P[6] during the 2005-2006 epidemic season in Philadelphia

1 reference

https://pubmed.ncbi.nlm.nih.gov/29782933

12 December 2020

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Genetic heterogeneity of wild-type G4P[6] porcine rotavirus strains detected in a diarrhea outbreak in a regularly vaccinated pig herd.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29782933

12 December 2020

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inferred from PubMed ID database lookup

Identification of porcine rotavirus-like genotype P[6] strains in Taiwanese children

1 reference

https://pubmed.ncbi.nlm.nih.gov/29782933

12 December 2020

based on heuristic

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Cell attachment protein VP8* of a human rotavirus specifically interacts with A-type histo-blood group antigen

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https://pubmed.ncbi.nlm.nih.gov/29782933

12 December 2020

based on heuristic

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Systematic review of regional and temporal trends in global rotavirus strain diversity in the pre rotavirus vaccine era: insights for understanding the impact of rotavirus vaccination programs.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29782933

12 December 2020

based on heuristic

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Efficacy of human rotavirus vaccine against severe gastroenteritis in Malawian children in the first two years of life: a randomized, double-blind, placebo controlled trial

1 reference

https://pubmed.ncbi.nlm.nih.gov/29782933

12 December 2020

based on heuristic

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Genotype constellation and evolution of group A rotaviruses infecting humans

1 reference

https://pubmed.ncbi.nlm.nih.gov/29782933

12 December 2020

based on heuristic

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Rotavirus in diarrheal children in rural Burkina Faso: high prevalence of genotype G6P[6].

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https://pubmed.ncbi.nlm.nih.gov/29782933

12 December 2020

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Identification of an avian group A rotavirus containing a novel VP4 gene with a close relationship to those of mammalian rotaviruses

1 reference

https://pubmed.ncbi.nlm.nih.gov/29782933

12 December 2020

based on heuristic

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Sequence analysis of the whole genomes of five African human G9 rotavirus strains

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Evolutionary dynamics of West Nile virus in the United States, 1999-2011: phylogeny, selection pressure and evolutionary time-scale analysis

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12 December 2020

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Genetic analysis of G12P[8] rotaviruses detected in the largest U.S. G12 genotype outbreak on record

1 reference

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12 December 2020

based on heuristic

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Update of rotavirus strains circulating in Africa from 2007 through 2011.

1 reference

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12 December 2020

based on heuristic

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Molecular epidemiology of contemporary G2P[4] human rotaviruses cocirculating in a single U.S. community: footprints of a globally transitioning genotype

1 reference

https://pubmed.ncbi.nlm.nih.gov/29782933

12 December 2020

based on heuristic

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Whole genome analyses of G1P[8] rotavirus strains from vaccinated and non-vaccinated South African children presenting with diarrhea.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29782933

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Whole-genome analyses of DS-1-like human G2P[4] and G8P[4] rotavirus strains from Eastern, Western and Southern Africa

1 reference

https://pubmed.ncbi.nlm.nih.gov/29782933

12 December 2020

based on heuristic

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Identification of novel Ghanaian G8P[6] human-bovine reassortant rotavirus strain by next generation sequencing

1 reference

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12 December 2020

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Both Lewis and secretor status mediate susceptibility to rotavirus infections in a rotavirus genotype-dependent manner

1 reference

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12 December 2020

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Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak

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Review of global rotavirus strain prevalence data from six years post vaccine licensure surveillance: is there evidence of strain selection from vaccine pressure?

1 reference

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12 December 2020

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Effectiveness of monovalent human rotavirus vaccine against admission to hospital for acute rotavirus diarrhoea in South African children: a case-control study

1 reference

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12 December 2020

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1 reference

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12 December 2020

based on heuristic

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1 reference

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12 December 2020

based on heuristic

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Complete genomic sequence for an avian group G rotavirus from South Africa

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolution of a G6P[6] rotavirus strain isolated from a child with acute gastroenteritis in Ghana, 2012

1 reference

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12 December 2020

based on heuristic

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1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome-Wide Evolutionary Analyses of G1P[8] Strains Isolated Before and After Rotavirus Vaccine Introduction

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Complete genome analyses of the first porcine rotavirus group H identified from a South African pig does not provide evidence for recent interspecies transmission events.

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Impact and Effectiveness of Monovalent Rotavirus Vaccine Against Severe Rotavirus Diarrhea in Ghana

1 reference

https://pubmed.ncbi.nlm.nih.gov/29782933

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effectiveness of Pentavalent Rotavirus Vaccine Under Conditions of Routine Use in Rwanda

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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1 reference

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12 December 2020

based on heuristic

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1 reference

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12 December 2020

based on heuristic

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Respiratory Syncytial Virus whole-genome sequencing identifies convergent evolution of sequence duplication in the C-terminus of the G gene

1 reference

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12 December 2020

based on heuristic

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Human P[6] Rotaviruses From Sub-Saharan Africa and Southeast Asia Are Closely Related to Those of Human P[4] and P[8] Rotaviruses Circulating Worldwide.

1 reference

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12 December 2020

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inferred from PubMed ID database lookup

Effectiveness of rotavirus vaccines against rotavirus infection and hospitalization in Latin America: systematic review and meta-analysis

1 reference

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12 December 2020

based on heuristic

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Comprehensive Genome Scale Phylogenetic Study Provides New Insights on the Global Expansion of Chikungunya Virus

1 reference

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12 December 2020

based on heuristic

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Whole-genome characterisation of G12P[6] rotavirus strains possessing two distinct genotype constellations co-circulating in Blantyre, Malawi, 2008.

1 reference

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12 December 2020

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Efficacy, safety and effectiveness of licensed rotavirus vaccines: a systematic review and meta-analysis for Latin America and the Caribbean.

1 reference

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Impact of rotavirus vaccine introduction and post-introduction etiology of diarrhea requiring hospital admission in Haydom, Tanzania, a rural African setting

1 reference

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10.1016/J.MEEGID.2018.05.013

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27 March 2020

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27 March 2020

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