Computer simulations aimed at structure prediction of supersecondary motifs in proteins (Q74527953)

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11 November 2019

title

Computer simulations aimed at structure prediction of supersecondary motifs in proteins (English)

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11 November 2019

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F Forcellino

1

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11 November 2019

P Derreumaux

series ordinal

2

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publication date

1 November 2001

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11 November 2019

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volume

45

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11 November 2019

issue

2

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11 November 2019

page(s)

159-166

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Correlation of observed fold frequency with the occurrence of local structural motifs

11 November 2019

cites work

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21 January 2018

Finding the right fold

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21 January 2018

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Folding simulations of a three-stranded antiparallel beta -sheet peptide

21 January 2018

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Solution conformations and thermodynamics of structured peptides: molecular dynamics simulation with an implicit solvation model.

21 January 2018

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Exploring the folding free energy surface of a three-helix bundle protein

21 January 2018

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Generating ensemble averages for small proteins from extended conformations by Monte Carlo simulations.

21 January 2018

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LINUS: a hierarchic procedure to predict the fold of a protein.

21 January 2018

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Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions

21 January 2018

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Improved prediction of protein secondary structure by use of sequence profiles and neural networks

21 January 2018

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Protein secondary structure prediction based on position-specific scoring matrices

21 January 2018

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Protein fold recognition by prediction-based threading

21 January 2018

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Enhanced genome annotation using structural profiles in the program 3D-PSSM

21 January 2018

1 reference

Equation of State Calculations by Fast Computing Machines

21 January 2018

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Design of a 20-amino acid, three-stranded beta-sheet protein

21 January 2018

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De novo design of a monomeric three-stranded antiparallel beta-sheet

21 January 2018

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Structure of the WW domain of a kinase-associated protein complexed with a proline-rich peptide.

21 January 2018

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Structural analysis of WW domains and design of a WW prototype

21 January 2018

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Dissection of the de novo designed peptide alpha t alpha: stability and properties of the intact molecule and its constituent helices

21 January 2018

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Solution structure of a de novo helical protein by 2D-NMR spectroscopy

21 January 2018

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Prediction of the occurrence of the ADP-binding beta alpha beta-fold in proteins, using an amino acid sequence fingerprint

21 January 2018

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Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

21 January 2018

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RASMOL: biomolecular graphics for all

21 January 2018

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Discrimination of the native from misfolded protein models with an energy function including implicit solvation

21 January 2018

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Application of a self-consistent mean field theory to predict protein side-chains conformation and estimate their conformational entropy

21 January 2018

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Design and synthesis of new enzymes based on the lactate dehydrogenase framework

21 January 2018

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Pig heart short chain L-3-hydroxyacyl-CoA dehydrogenase revisited: Sequence analysis and crystal structure determination

21 January 2018

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Non-native local interactions in protein folding and stability: introducing a helical tendency in the all beta-sheet alpha-spectrin SH3 domain

21 January 2018

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Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution

21 January 2018

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Molecular dynamics simulations of N-terminal peptides from a nucleotide binding protein

21 January 2018

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Structure of the transition state for folding of the 129 aa protein CheY resembles that of a smaller protein, CI-2

21 January 2018

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Identifying the structural boundaries of independent folding domains in the alpha subunit of tryptophan synthase, a beta/alpha barrel protein

21 January 2018

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Universally conserved positions in protein folds: reading evolutionary signals about stability, folding kinetics and function

21 January 2018

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Structural evidence for evolution of the beta/alpha barrel scaffold by gene duplication and fusion

21 January 2018

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21 January 2018

Identifiers

DOI

10.1002/PROT.1135

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11 November 2019

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