The architectural organization and mechanistic function of group II intron structural elements (Q74782086)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9666325%20AND%20SRC:MED&resulttype=core&format=json

13 November 2019

review article

1 reference

title

The architectural organization and mechanistic function of group II intron structural elements (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9666325%20AND%20SRC:MED&resulttype=core&format=json

13 November 2019

author name string

P Z Qin

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9666325%20AND%20SRC:MED&resulttype=core&format=json

13 November 2019

A M Pyle

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9666325%20AND%20SRC:MED&resulttype=core&format=json

13 November 2019

publication date

1 June 1998

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9666325%20AND%20SRC:MED&resulttype=core&format=json

Current Opinion in Structural Biology

13 November 2019

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9666325%20AND%20SRC:MED&resulttype=core&format=json

13 November 2019

volume

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9666325%20AND%20SRC:MED&resulttype=core&format=json

13 November 2019

issue

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9666325%20AND%20SRC:MED&resulttype=core&format=json

13 November 2019

page(s)

301-308

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9666325%20AND%20SRC:MED&resulttype=core&format=json

Homing of a group II intron from Lactococcus lactis subsp. lactis ML3.

13 November 2019

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Group II intron from Pseudomonas alcaligenes NCIB 9867 (P25X): entrapment in plasmid RP4 and sequence analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

A tripartite group II intron in mitochondria of an angiosperm plant

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

The mitochondrial LSU rDNA of the brown alga Pylaiella littoralis reveals alpha-proteobacterial features and is split by four group IIB introns with an atypical phylogeny

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Group II intron endonucleases use both RNA and protein subunits for recognition of specific sequences in double-stranded DNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Nuclear mutations that block group II RNA splicing in maize chloroplasts reveal several intron classes with distinct requirements for splicing factors

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Splicing and intron-internal RNA editing of trnK-matK transcripts in barley plastids: support for MatK as an essential splice factor

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

The reverse-transcriptase-like proteins encoded by group II introns in the mitochondrial genome of the brown alga Pylaiella littoralis belong to two different lineages which apparently coevolved with the group II ribosyme lineages

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

A multitude of suppressors of group II intron-splicing defects in yeast

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Efficient integration of an intron RNA into double-stranded DNA by reverse splicing

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Identification of splicing signals in introns of yeast mitochnodrial split genes: mutational alterations in intron bI 1 and secondary structures in related introns

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Comparison of fungal mitochondrial introns reveals extensive homologies in RNA secondary structure

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Structural Analysis of a Group II Intron by Chemical Modifications and Minimal Energy Calculations

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Catalytic site components common to both splicing steps of a group II intron

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Comparative and functional anatomy of group II catalytic introns--a review

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Conserved sequences and structures of group I introns: building an active site for RNA catalysis--a review

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Stereochemical selectivity of group II intron splicing, reverse splicing, and hydrolysis reactions

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

An RNA conformational change between the two chemical steps of group II self-splicing.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

An independently folding domain of RNA tertiary structure within the Tetrahymena ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Group II intron domain 5 facilitates a trans-splicing reaction

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Kinetic analysis of the 5' splice junction hydrolysis of a group II intron promoted by domain 5.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Building a kinetic framework for group II intron ribozyme activity: quantitation of interdomain binding and reaction rate

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Conversion of a group II intron into a new multiple-turnover ribozyme that selectively cleaves oligonucleotides: elucidation of reaction mechanism and structure/function relationships

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Domain 5 interacts with domain 6 and influences the second transesterification reaction of group II intron self-splicing

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Mobility of yeast mitochondrial group II introns: engineering a new site specificity and retrohoming via full reverse splicing

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Group II introns deleted for multiple substructures retain self-splicing activity

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

The phylogenetically predicted base-pairing interaction between alpha and alpha' is required for group II splicing in vitro

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Structure and activities of group II introns

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Base-pairing interactions involving the 5' and 3'-terminal nucleotides of group II self-splicing introns

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Multiple exon-binding sites in class II self-splicing introns

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Stopped-flow fluorescence spectroscopy of a group II intron ribozyme reveals that domain 1 is an independent folding unit with a requirement for specific Mg2+ ions in the tertiary structure

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Sequence specificity of a group II intron ribozyme: multiple mechanisms for promoting unusually high discrimination against mismatched targets

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Trans-activation of group II intron splicing by nuclear U5 snRNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Restoration of the self-splicing activity of a defective group II intron by a small trans-acting RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Multiple tertiary interactions involving domain II of group II self-splicing introns.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Group II intron ribozymes that cleave DNA and RNA linkages with similar efficiency, and lack contacts with substrate 2'-hydroxyl groups

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Identification of structural elements critical for inter-domain interactions in a group II self-splicing intron

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Evolutionary relationships among group II intron-encoded proteins and identification of a conserved domain that may be related to maturase function

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Catalytic role of 2'-hydroxyl groups within a group II intron active site

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Ribozyme catalysis from the major groove of group II intron domain 5.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Studies of point mutants define three essential paired nucleotides in the domain 5 substructure of a group II intron

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Catalytically critical nucleotide in domain 5 of a group II intron

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Two competing pathways for self-splicing by group II introns: a quantitative analysis of in vitro reaction rates and products

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Group II intron splicing in vivo by first-step hydrolysis

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Branch-site selection in a group II intron mediated by active recognition of the adenine amino group and steric exclusion of non-adenine functionalities

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Length changes in the joining segment between domains 5 and 6 of a group II intron inhibit self-splicing and alter 3' splice site selection

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Frequent use of the same tertiary motif by self-folding RNAs

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Crystal structure of a group I ribozyme domain: principles of RNA packing

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Remarkable morphological variability of a common RNA folding motif: the GNRA tetraloop-receptor interaction

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

A group II self-splicing intron from the brown alga Pylaiella littoralis is active at unusually low magnesium concentrations and forms populations of molecules with a uniform conformation

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

Interaction of intronic boundaries is required for the second splicing step efficiency of a group II intron.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980062-6

7 January 2021

10.1016/S0959-440X(98)80062-6

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9666325%20AND%20SRC:MED&resulttype=core&format=json

13 November 2019

1 reference